MXO03668.5prime Sequence
870 bp (805 high quality bases) assembled on 2007-06-27
> MXO03668.5prime
CAGTCGACATGGCTCCTCCATCATACACCGATTTGGGCAAACAGGCTCGC
GACATCTTCAGCAAAGGCTACAACTTTGGCCTGTGGAAGCTCGATCTGAA
GACTAAGACCTCGTCGGGCATTGAGTTCAACACAGCCGGACACTCCAACC
AGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACAAGGTCAAG
GACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAACACGCTGTT
CACCGAGGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAAGCTGTCCC
TGGAGGGCAACTTTGCTCCTCAGTCTGGAAACAAGAACGGCAAGTTCAAG
GTTGCCTACGGCCATGAGAACGTCAAGGCCGATTCGGATGTGAACATTGA
TCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGCTTGGCTACCAGGGAT
GGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCAAGCTGACC
ACCAACAACTTTGCCCTTGGCTACACCACCAAGGACTTTGTTCTGCACAC
AGCTGTCAACGATGGCCAGGAGTTCAGCGGCTCGATCTTCCAACGCACTT
CGGACAAGCTGGATGTGGGTGTACAGCTGTCGTGGGCCAGCGGCACCAGC
AACACCAAGTTCGCCATCGGCGCCAAGTATCAGCTGGATGATGATGCCAG
CGTGCGCGCTAAGGTGAACAACGCCAGCCAGGTGGGTCTGGGCTACCAGC
AGAAGTTGCGCGACGGAGTCACCCTGACCCTGTCCACGCTGGTCGATGGC
AAGAACTTCAATGCCGGCGGCCACAAGATCGGTGTGGGTCTGGAGCTGGA
GGCCGCAAGCTTTCTAGACC
MXO03668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6647-PA | 849 | porin-RA | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG6647-PB | 849 | porin-RB | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG6647-PC | 849 | porin-RC | 1..846 | 9..854 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| porin-RC | 2625 | CG6647-RC | 1332..2179 | 7..854 | 4225 | 99.9 | Plus |
| porin-RE | 1387 | CG6647-RE | 96..941 | 9..854 | 4215 | 99.9 | Plus |
| porin-RD | 1525 | CG6647-RD | 36..881 | 9..854 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10848544..10848863 | 328..9 | 1585 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10847871..10848168 | 854..557 | 1490 | 100 | Minus |
| 2L | 23513712 | 2L | 10848241..10848469 | 556..328 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:50 has no hits.
MXO03668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:45:58 Download gff for
MXO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6647-PC | 1..849 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:36 Download gff for
MXO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| porin-RC | 1328..2183 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:30 Download gff for
MXO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| porin-RC | 1328..2183 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:30 Download gff for
MXO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10847867..10848168 | 557..859 | 99 | <- | Minus |
| 2L | 10848241..10848468 | 329..556 | 100 | <- | Minus |
| 2L | 10848544..10848871 | 1..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:36 Download gff for
MXO03668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10847867..10848168 | 557..859 | 99 | <- | Minus |
| arm_2L | 10848241..10848468 | 329..556 | 100 | <- | Minus |
| arm_2L | 10848544..10848871 | 1..328 | 98 | | Minus |
