MXO03670.5prime Sequence
836 bp (832 high quality bases) assembled on 2007-06-27
> MXO03670.5prime
CAGTCGACATGGCAGAACCAGGAGAACAACGAAAATTCGTATTGGGACGC
TGTTGTATTTTCCACTGGCGCGGGAAGGCTTCAATAATTATACCCTTGAT
CACACTGCCAATTCTTATTTATGGCTTTCAGACCGACATGGCCGAGTTCA
AGTGCCTGTGGCTTATTGTTACCATGGCCCTGCTGTGGATCACCGAAACC
CTACCGATATATGTCACGGCATTGTTTCCCCTTGTCTTTTGCCCTCTCCT
TGGTCTTGTGAATGCCTCTATAGTCTGCAAACAGTACTTCACCGACACCA
TTGTGGTATTCCTTGGTGGGCTTATTGTGGCCTTGGGAATTGAGTACAGT
AATCTACACACCAGAATTGCCCTGAGGGTCATTCGGATTGTCGGTGGAAG
TCCTAGACGTTTATTCGTAGGCTTGATGAGCGTGAGCACGTTTATGGGAT
TGTGGATATCCAACTCAGCCGGAACGGCCATGATGTGCCCCATTGTCAAA
GCGCTGGTCAATGAATTGGATACCAACAAAATATTTCCCGTTTATATGAC
GCAAGAGGAAGAACCAGTAGAGGAGGGAGAACCACCACATCCGTCGAAGA
TAACAGTAGCCTTCTACGCTGGCATAGCCTACGCCTCCTCCATTGGGGGA
CTGGGAACACTGATTGGCACAGGAACGAATCTGGTCTTTAGGGGCATATA
CACGGAGCGATTTCCCACTTCTACGGTGGAGATTACATTTGCCAACTTTA
TGTTCTACTCGATACCCTTGATGGTGATTGTAAACGTTACGCTGGTTATC
ATAGCTTTCCTCATCACGCACATGGGACTGTTTCGA
MXO03670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33933-PA | 1689 | Indy-2-RA | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG33933-PB | 1689 | Indy-2-RB | 1..828 | 9..836 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-2-RB | 1855 | CG33933-RB | 69..896 | 9..836 | 4140 | 100 | Plus |
| Indy-2-RA | 4064 | CG33933-RA | 98..925 | 9..836 | 4140 | 100 | Plus |
| CG33934-RE | 4064 | CG33934-RE | 98..925 | 9..836 | 4140 | 100 | Plus |
| Indy-2-RA | 4064 | CG33933-RA | 2552..2696 | 453..597 | 260 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20043283..20043432 | 260..409 | 750 | 100 | Plus |
| 3R | 32079331 | 3R | 20044118..20044247 | 707..836 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 20043934..20044060 | 581..707 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 20043103..20043219 | 144..260 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 20043624..20043739 | 409..524 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 20042934..20043047 | 31..144 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 20043822..20043877 | 525..580 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:18 has no hits.
MXO03670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:13 Download gff for
MXO03670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33933-PB | 1..827 | 9..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:38 Download gff for
MXO03670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-2-RB | 69..895 | 9..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:31 Download gff for
MXO03670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33934-RE | 98..924 | 9..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:31 Download gff for
MXO03670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20042854..20042876 | 9..31 | 100 | -> | Plus |
| 3R | 20042935..20043046 | 32..143 | 100 | -> | Plus |
| 3R | 20043103..20043219 | 144..260 | 100 | -> | Plus |
| 3R | 20043284..20043432 | 261..409 | 100 | -> | Plus |
| 3R | 20043625..20043739 | 410..524 | 100 | -> | Plus |
| 3R | 20043822..20043877 | 525..580 | 100 | -> | Plus |
| 3R | 20043934..20044059 | 581..706 | 100 | -> | Plus |
| 3R | 20044118..20044246 | 707..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:38 Download gff for
MXO03670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15869840..15869968 | 707..835 | 100 | | Plus |
| arm_3R | 15869006..15869154 | 261..409 | 100 | -> | Plus |
| arm_3R | 15869347..15869461 | 410..524 | 100 | -> | Plus |
| arm_3R | 15869544..15869599 | 525..580 | 100 | -> | Plus |
| arm_3R | 15868576..15868598 | 9..31 | 100 | -> | Plus |
| arm_3R | 15868657..15868768 | 32..143 | 100 | -> | Plus |
| arm_3R | 15868825..15868941 | 144..260 | 100 | -> | Plus |
| arm_3R | 15869656..15869781 | 581..706 | 100 | -> | Plus |
