MXO03671.5prime Sequence
863 bp (789 high quality bases) assembled on 2007-06-27
> MXO03671.5prime
CAGTCGACATGGAGGCCATCATCATGACGACCCTGCCCAACCTGACAACG
GATGCAGGTGACAGCAGCTTCTGGCTAACCGGTGCCCTCTCGCTCTCCGA
GATGTTGGCCAACTCGAGCCACAGCCATTCCACTGGGAGCACAACCTCGA
CGGCTGGGAGTTCGGCCACCGAATCATCCGCTGTGAATGTAGGCAAGGAC
CACGACAAGCACGTGAATGACAGCGTTTCCACGGGTCTGAGCAATTACAG
TAATTACCCCAGCTACATTCACTACAGGGACAAGTACGACCTGAGCTACA
TTGCCAAGGTGAATCCCTTTTGGCTACAGTTCGAGCCACCTAAGTCGAGC
ACCTTCCTGATTATGGCCGCCCTGTATTGCCTGATTTCGGTGGTGGGATG
TGTGGGCAATGCGTTCGTCATCTTTATGTTTGCCAACCGCAAATCTCTGC
GGACTCCTGCCAATATCCTGGTGATGAATCTGGCCATCTGCGACTTTCTG
ATGCTCATCAAATGCCCGATTGCCATTTACAATAACATCAAAGAGGGTCC
AGCTTTAGGAGACATTGCCTGTCGCCTCTATGGATTTGTGGGTGGCCTAA
GTGGCACCTGTGCCATCGGTACCCTCACCGCCATCGCTTTGGATCGGTAC
AATGTGGTGGTGCATCCACTGCAACCGCTGAGACGCTGCTCCCGCCTGCG
ATCCTACCTGATCATCCTGCTGATCTGGTGCTACAGCTTCCTGTTCGCTG
TGATGCCGGCCCTGGATATCGGACTATCTGTCTATGTGCCAGAGGGCTTC
CTCACCACCTGCAGCTTCGATTATCTGAACAAGGAGATGCCAGCTCGCAT
TTTCATGCCACTG
MXO03671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5638-PA | 1452 | Rh7-RA | 1..855 | 9..863 | 4250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh7-RA | 4014 | CG5638-RA | 785..1640 | 8..863 | 4265 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12167238..12167565 | 567..240 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 12166579..12166875 | 863..567 | 1470 | 99.7 | Minus |
| 3L | 28110227 | 3L | 12168142..12168375 | 241..8 | 1170 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 7088..7134 | 506..552 | 109 | 70.2 | Plus |
MXO03671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:21 Download gff for
MXO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5638-PA | 1..855 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:44 Download gff for
MXO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 776..1640 | 1..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:37 Download gff for
MXO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh7-RA | 776..1640 | 1..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:37 Download gff for
MXO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12166579..12166874 | 568..863 | 99 | <- | Minus |
| 3L | 12167238..12167563 | 242..567 | 100 | <- | Minus |
| 3L | 12168142..12168379 | 1..241 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:44 Download gff for
MXO03671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12159679..12159974 | 568..863 | 99 | <- | Minus |
| arm_3L | 12160338..12160663 | 242..567 | 100 | <- | Minus |
| arm_3L | 12161242..12161479 | 1..241 | 98 | | Minus |
