MXO03672.5prime Sequence
848 bp (771 high quality bases) assembled on 2007-06-27
> MXO03672.5prime
CAGTCGACATGCGCTCCTGGAAAAATCGCAGTCGATCCGAAATGCAAACA
CTCGAAACGAGAGTGCGGCCCCTGCAGGGCGCTCAGCTAACTCAGCTGCT
CCTCGGTGGCATCCTCTGCCTCACAATCGCATCGCACACACAGACGTCGG
CGGAGGCGGCAGGCGGTCGGGTATCTGGACCCGGAGCAGGAACATCAGAA
GGAGCAGGAACCTCATCGGCATCGGCAGCCTCCACGGCCATCAGCTCCGA
TGAGAGCGGCGACCCATCATCGGCGACCGCGTTCTCCAGTTTGGCTCAAG
TGTCCTCGCTTCTGCCGGAGGCATCCGCTCTGTCGGCGACATCGGGACTC
GTGGAGCCCTATCTGGATGGCTACGCCACTTCCAATGTGACCACTCAGAT
CGGGACACACGCGTATCTGCCCTGTCGGGTCAAACAGCTGGGCAACAAAT
CTGTGTCCTGGATTCGTCTGCGAGATGGGCACATCTTGACCGTTGACAGG
GCCGTCTTCATAGCCGACCAGCGATTCCTGGCCATCAAGCAGCCGGACAA
GTACTGGACCCTGCAGATTAAGTACGTCCAGGCCCGGGACGCCGGCTCCT
ACGAGTGCCAGGTCTCTACGGAGCCCAAAGTCAGCGCCCGTGTCCAGCTG
CAAGTTGTGGTTCCTCGCACGGAGATCCTAGGAGAGCCGGACCGCTACGT
GAAGGCGGGCAGCAACGTGGTGCTCCGCTGTATCGTGCGCGGAGCCTTGG
AGCCGCCCACGTTCATCATGTGGTACCACGGCGCCGAGCAGCTGGCGGCC
GACTCCCGGCGCCACCGCACGCAACTGGATCCCAACCTGCCGGAGGCC
MXO03672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33202-PB | 1083 | dpr11-RB | 1..840 | 9..848 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr11-RC | 4651 | CG33202-RC | 1070..1909 | 9..848 | 4200 | 100 | Plus |
| dpr11-RB | 3519 | CG33202-RB | 1070..1909 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6545673..6545974 | 430..129 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 6532657..6532845 | 848..660 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 6538307..6538470 | 660..497 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 6566135..6566255 | 129..9 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 6542570..6542642 | 500..428 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:37 has no hits.
MXO03672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:28 Download gff for
MXO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33202-PB | 1..840 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:29 Download gff for
MXO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr11-RB | 1065..1909 | 2..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:33 Download gff for
MXO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr11-RB | 1065..1909 | 2..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:33 Download gff for
MXO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6532657..6532844 | 661..848 | 100 | <- | Minus |
| 3R | 6538307..6538467 | 500..660 | 100 | <- | Minus |
| 3R | 6542571..6542641 | 429..499 | 100 | <- | Minus |
| 3R | 6545675..6545973 | 130..428 | 100 | <- | Minus |
| 3R | 6566135..6566260 | 2..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:29 Download gff for
MXO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2358379..2358566 | 661..848 | 100 | <- | Minus |
| arm_3R | 2364029..2364189 | 500..660 | 100 | <- | Minus |
| arm_3R | 2368293..2368363 | 429..499 | 100 | <- | Minus |
| arm_3R | 2371397..2371695 | 130..428 | 100 | <- | Minus |
| arm_3R | 2391857..2391982 | 2..129 | 96 | | Minus |
