MXO03673.5prime Sequence
793 bp (646 high quality bases) assembled on 2007-06-27
> MXO03673.5prime
CAGTCGACATGCCCGGCTTTCACCTCCATGAGATGGGTGAAATGGTCCTG
GACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTGGCCTCCGA
CATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCACGGACGCCG
TCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGTTGGAGGCG
CTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAGCTGCGCGA
TAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGAGTTCCGGC
GGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGCGCAGCGAG
ACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAGAACAAGCG
GCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCAGAGCTCCG
GCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCAACCACGAG
CTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTGAAGGAGCA
GATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGAGCTGCAGG
ACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGCGTCTGAAG
GCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAGGCCCAAGT
GAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCTGCAGGACC
AGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGGC
MXO03673.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11448-PA | 1332 | CG11448-RA | 1..785 | 9..793 | 3900 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11448-RC | 3603 | CG11448-RC | 491..1275 | 9..793 | 3910 | 99.9 | Plus |
| CG11448-RB | 3799 | CG11448-RB | 491..1275 | 9..793 | 3910 | 99.9 | Plus |
| CG11448-RA | 3784 | CG11448-RA | 491..1275 | 9..793 | 3910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1393544..1394158 | 9..623 | 3060 | 99.8 | Plus |
| X | 23542271 | X | 1394224..1394393 | 624..793 | 850 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 3133..3169 | 318..353 | 110 | 81.1 | Plus |
MXO03673.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:36 Download gff for
MXO03673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11448-PA | 1..785 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:35 Download gff for
MXO03673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11448-RA | 491..1275 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:07 Download gff for
MXO03673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11448-RA | 491..1275 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:07 Download gff for
MXO03673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1393544..1394158 | 9..623 | 99 | -> | Plus |
| X | 1394224..1394393 | 624..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:35 Download gff for
MXO03673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1287577..1288191 | 9..623 | 99 | -> | Plus |
| arm_X | 1288257..1288426 | 624..793 | 100 | | Plus |
