MXO03675.5prime Sequence
784 bp (727 high quality bases) assembled on 2007-06-27
> MXO03675.5prime
CAGTCGACATGTGCCACAATTCAGGGATCGTGGAGAAAAACAACGAGCAG
CAGATCGAGCGCTACATGGCCTGTGGGATGCCATCGAAGGCGGTGAAGAG
TGTCAAGTACACGCTGAAGAAGCGCGAGAAGAAGGAGCAGCAGCGGAGAG
ATCTGGAAAAGGATCTGCACAGGGAACAGCAGTTCCTTGAGGAACTCGAG
CTAAGCAGTAGCGCCAGCGACTCCTCCTCCTCCTCCTCGTCCTCCTCGGT
CACCGGCAGCGATAGCGAGGATAGCGGCGTTACCGAAACCGTTTTGAAAT
CGTCGCCGTCGGCGGATATGACAACCAGTCCAAAGGTCATCTCACCGGCC
CCCACACCCAGAAGCGACCTCTTACGATTCTGCCCGCGATTTCGCAAGCT
GCAGCAGGAGCAGCAGCAGCAGATGCTCAAGGAGATGGAGTTGCAGGAGG
AGGAGCCCTTGGCCACCAGCACGCCCGCCGCCGCCCTGAAGGCTCAACAG
CAGCGCAAGCTGAGCTCCATGGAGCCGTCAATGGACGACGCCCTGGCCAT
CGGCACCCAGATGACTAGGCACGTGTCCGAGCGAATCACCTGCCTGGTGG
CCAAGCTGCAGGCCAGTCGCCTGTACACAATTCTGACGCGTACGACACAG
CCAGCACACTTGATAGCTGTTTGCATCTTGGCCTTTGTGCTGATGACTGT
GGGACGCGACCTCATCGACCCAACGACAACGGTGGCAACAGCAGAAGCAG
CAGCGTCTGGCACAGCAGCATCGACGAGAACAGC
MXO03675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-PA | 1311 | CG32512-RA | 1..776 | 9..784 | 3805 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 2322 | CG32512-RD | 322..1097 | 9..784 | 3835 | 99.6 | Plus |
| CG32512-RA | 2215 | CG32512-RA | 322..1097 | 9..784 | 3835 | 99.6 | Plus |
| CG32512-RC | 1412 | CG32512-RC | 136..294 | 626..784 | 765 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21066600..21067219 | 628..9 | 3085 | 99.8 | Minus |
| X | 23542271 | X | 21063888..21064043 | 784..629 | 750 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 19:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2388 | 721..784 | 140 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1133 | 727..784 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2355 | 734..784 | 111 | 68.6 | Plus |
MXO03675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:46:48 Download gff for
MXO03675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-PA | 1..776 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:23 Download gff for
MXO03675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1097 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:59 Download gff for
MXO03675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 322..1097 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:59 Download gff for
MXO03675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21063888..21064043 | 629..784 | 98 | <- | Minus |
| X | 21066600..21067219 | 9..628 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:23 Download gff for
MXO03675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20934915..20935070 | 629..784 | 98 | <- | Minus |
| arm_X | 20937627..20938246 | 9..628 | 99 | | Minus |
