MXO03678.5prime Sequence
803 bp (800 high quality bases) assembled on 2007-06-27
> MXO03678.5prime
CAGTCGACATGGTTTCTACTTTCATTGGATTATTAGACATTCAATCATGG
TGGGAGATACCGTGTATTTCGCATTTCTGTTCATTGTTTAGTTCTGCCTT
TGATCTGCCCGACATCGACATCGAGGACCTCGAATCGGCGCTGCTCTCCG
ATGGTACCAGCGATGAGGATCAGGTCGCCCTAGTGCCCGAGTTAATTGTG
CGCCTGCTCAAGGGCTGCGATGCGCTACAGACGGTAGCCAAGGAAATCAC
ACACAGCAACTATCAGATGTTCTTGCGTCGCTTCCTGCGCCAACAGTGTC
GCCTGCACCAGACCGAGAACCACTTCGACACGGACATTGACTTCCAGTCG
CTGCCCGTGCGCAAGCGCCTGCACATTCTGCACGATCTGTGCCACTTTCG
CCTGGACTCCGTCGATGTGCAGGTCATCCTCAGCAATCTAGAGGCGGATA
GTCTGCGCGTGGAGCCTCTGGGCTACGACGCCAAGAATTCCGGCTACTGG
TACTTCTACGGCACGCGACTATATCGGGAGGACAAAGCCACCGGTGGATC
GGCCTCCTCCAGTTCGGGTTCGGGATCAGGTGGCGCTGGAGCCTCAACTG
GCGGAGCATCCAACAGCAAGGGCATCGGCAGCAACGGTACAGTTTGGCAA
GTCATCTGCTTCACCGAAGAGGACTGGCAAAACTTGGCCGCCAAGTTTAA
GACCTCGACGAACGCCAAGGAGCGCGAACTCTTTAACATACTCGATGACA
ACTTTCTGCCCAAGCTGCCGCAGCTTTTCCGCGAACGTGAGCGTTTGAGG
CGT
MXO03678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32393-PA | 1029 | dikar-RA | 1..795 | 9..803 | 3975 | 100 | Plus |
| CG32393-PB | 1029 | dikar-RB | 1..795 | 9..803 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dikar-RG | 11160 | CG42799-RG | 247..1041 | 9..803 | 3975 | 100 | Plus |
| dikar-RE | 3009 | CG42799-RE | 247..1041 | 9..803 | 3975 | 100 | Plus |
| dikar-RD | 11586 | CG42799-RD | 247..1041 | 9..803 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6740962..6741641 | 803..124 | 3400 | 100 | Minus |
| 3L | 28110227 | 3L | 6741701..6741792 | 126..35 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:49 has no hits.
MXO03678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:10 Download gff for
MXO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32393-PB | 1..795 | 9..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:16 Download gff for
MXO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RD | 242..1041 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:40 Download gff for
MXO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RD | 242..1041 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:40 Download gff for
MXO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6740962..6741639 | 126..803 | 100 | <- | Minus |
| 3L | 6741702..6741790 | 37..125 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:16 Download gff for
MXO03678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6734062..6734739 | 126..803 | 100 | <- | Minus |
| arm_3L | 6734802..6734890 | 37..125 | 100 | <- | Minus |
