MXO03679.5prime Sequence
791 bp (788 high quality bases) assembled on 2007-06-27
> MXO03679.5prime
CAGTCGACATGTCCAAAGAAAAGGAGGACGAGTGCGACAAGCACAAACAG
CAGGCGACGGCGGACGCCAAGTCCACGTCGAGCGAGGATTCCGATGAGTA
CCAATCGGCCGGTGAGGGCGAGGATGGAGACGGCGATGGTGACGGTGATT
CCCCAGCGGAGCGCCCGCCTGACAAAACCAGCCCCACGGTCGCCGTTGCG
CCCACAGCAAAGGCAGCATCGCCACTGCCCACTGTGAAGCCAGCATCCGA
GGCCCTGGACTTTCCTATGCACCGGAGTGTTTTCGAGGACGACATCAAGT
CGCTGCAGCGACGACTTCTATTGAGCACGGCCCAAGACGAAGTGGGTAGA
AAGGATAAGCACGGCAATACGCCACTCCATCTGGCCGTAATGCTGGGCAG
AAAGCACGCTGTCCGTTTGCTTCTGGCCCAAAACGCCCCCGTAAAGATCA
AGAACAATGAGGGCTGGTCCCCGCTGTCCGAGGCCATTAGCTACGGCGAC
CGCCAGACAATCACCCAGGTGCTGCGAATGCTAAAGCTGCAGTCCCGCGA
ACACATGGAGAGTCGGCGCGAGAAGCTGGTCAATGCGCTGCGCCAGATGC
AGGACTTCTACATGGAATTCAAGTGGGATTTTCAATCATGGCTGCCACTG
GTTTCCCGCATCCTGCCCTCGGACATCTGCCGGCTTTACAAGTCGGGCGC
CTCCATTCGTTTGGACACCACACTGGTGGACTTCAATGATATGCGTTGGG
AGCGAGGGGACATATCGTTCTTGTTTAGAGGTGAGGCGCCG
MXO03679.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-PA | 1632 | CG5742-RA | 1..783 | 9..791 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 101..886 | 6..791 | 3930 | 100 | Plus |
| CG5742-RB | 3060 | CG5742-RB | 101..886 | 6..791 | 3930 | 100 | Plus |
| CG5742-RA | 2947 | CG5742-RA | 101..886 | 6..791 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18150525..18151310 | 791..6 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:55 has no hits.
MXO03679.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:16 Download gff for
MXO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-PA | 1..783 | 9..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:18 Download gff for
MXO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 94..886 | 1..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:45 Download gff for
MXO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 94..886 | 1..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:45 Download gff for
MXO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18150525..18151311 | 1..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:18 Download gff for
MXO03679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14038030..14038816 | 1..791 | 99 | | Minus |
