MXO03681.5prime Sequence
849 bp (753 high quality bases) assembled on 2007-06-27
> MXO03681.5prime
CAGTCGACATGGCCAGAGAGGAGTCTCGCGGCAAGAGACCACTGAAAATC
TGGGACAGCTGGCGGAATGTGCGCAAGGGCGTCGTAGTTGGGACCTTCGA
GGAGCTCTTGGTCCGCGGCAAGGATAAGCTGGGGGTTCCTGCTTCAGAAC
CGGTGCGCGTTGTTCTGGAGTGTGATGGAACCCAAATCGAGGATGGCGAA
TACTTTCGCACCCTGGCCAACAATACGGTGCTGCTGCTGTTAAGGCAGGG
CGAGCGCTGGTATCCCACTGGCGTCGATGTCATAAAGGCTGCCATATCAG
CTATACCGAAAATCGTCTGTGAGACGATTCATGCGCTGGAGTTGCACGAT
GAGACACCGTCGTGGAAGATCATGGATAACAAAGGGCGTGTCACGGTCGT
TCTGCACTGGGATCAGCGGCAGGGTGGAGGAAGCGGCGGCGGAGGAGGAG
GCGGTGGCGCCGGCGGCGGAGTGGGGAGCATGTGCTCCGGCCTGGGCAGC
AGCAATGGGCTGCTGTCGTCCGATAAGTACTCGCCCTCAAAGAAGGGCCT
CTCCGCGCAGAGTTCGCTGGACAACAAGTCGGTGTCGTCGCAGTCCTCCC
AGCCGCGCTATGCCAGCCCTCAAATAACGGTGATCAGCGACGACGGACCG
GCGAGCATATACCATCCCGGTGGCGTTGTTCTGCCGCCAGGAGTTGTGAT
ACCCGGCGGCAGCAGGCGACTCTCCAAGCAGGGAAGCTCCTTCGACAGCA
CCGTAGGCGTGGGTGTGGGAGCTGTCCATGTGCACACGCCGGATTGCGCC
CCCCACGCCCACACGCCCAGCAGGGCGGGCAGTCCCAGCACCACCGAGT
MXO03681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1975-PA | 1449 | Rep2-RA | 1..841 | 9..849 | 4155 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-2-RC | 5839 | CG1975-RC | 1002..1842 | 9..849 | 4175 | 99.8 | Plus |
| Drep-2-RA | 5229 | CG1975-RA | 1003..1843 | 9..849 | 4175 | 99.8 | Plus |
| Drep-2-RD | 1827 | CG1975-RD | 74..903 | 20..849 | 4120 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9298266..9298824 | 291..849 | 2765 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9297264..9297536 | 19..291 | 1365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:02 has no hits.
MXO03681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:29 Download gff for
MXO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1975-PA | 1..841 | 9..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:20 Download gff for
MXO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RA | 994..1843 | 1..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:47 Download gff for
MXO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-2-RA | 994..1843 | 1..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:47 Download gff for
MXO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9297269..9297536 | 24..291 | 100 | -> | Plus |
| 2R | 9298267..9298824 | 292..849 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:20 Download gff for
MXO03681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5184774..5185041 | 24..291 | 100 | -> | Plus |
| arm_2R | 5185772..5186329 | 292..849 | 99 | | Plus |
