MXO03682.5prime Sequence
821 bp (631 high quality bases) assembled on 2007-06-27
> MXO03682.5prime
CAATCGACATGAGCGTTTCGATGTCACTGGTACAGGGTGGTGCTGCCGGT
GGTGCGCCACAGGGCGCCAGCGCAATCTTGGCCGCAGCGGCTCCCTACTA
TCAACCGCCGGCTGTTCCCCAGGATGTTCAGCCGGATCGTCCTATCGGCT
ATGGAGCATTCGGAGTTGTCTGGGCCGTCACAGATCCTCGCGATGGACGA
CGAGTGGCATTGAAGAAGCTGCCAAATGTGTTCCAATCGTTGGTCTCATC
GAAGCGCGTTTTTCGCGAGCTGAAAATGCTGTGCTTCTTCAAGCATGAAA
ATGTTCTTTCAGCTCTGGACATTCTACAGCCACCGCATTTGGATTTCTTT
CAAGAAATCTATGTGATAACGGAGCTGCTGCAATCGGATCTGCACAAGAT
AATCGTGTCGCCACAGCACCTGTCCGCCGACCACATCAAGGTGTTCCTGT
ACCAGATCCTGCGCGGCCTCAAATATCTGCACTCGGCCCGCATCCTGCAT
CGCGACATCAAGCCGGGCAATCTGCTGGTCAACTCGAATTGCGTGCTCAA
GATCTGTGACTTTGGATTGGCCCGCGTCGAGGAGCCGGATCAGGCCAAGC
ACATGACCCAAGAGGTGGTCACCCAGTACTATCGCGCACCGGAGATTCTG
ATGGGCGCTCGCCACTACTCGTCGGCGGTGGATGTATGGTCGGTGGGCTG
CATTTTTGGCGAGCTGCTGGGCCGTCGCATCCTCTTCCAGGCACAGAATC
CTGTGCAGCAGCTGGAGCTGATTACCGAGCTGCTTGGCACGCCCACCATG
AAGGATATGCGTCACACCCTG
MXO03682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7892-PA | 1245 | nmo-RA | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG7892-PB | 1245 | nmo-RB | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG7892-PE | 1293 | nmo-RE | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG7892-PC | 1245 | nmo-RC | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG7892-PF | 1293 | nmo-RF | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG7892-PG | 1293 | nmo-RG | 1..807 | 9..815 | 4010 | 99.8 | Plus |
| CG7892-PD | 603 | nmo-RD | 1..165 | 651..815 | 800 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmo-RH | 6235 | CG7892-RH | 719..1525 | 9..815 | 4020 | 99.9 | Plus |
| nmo-RG | 2250 | CG7892-RG | 548..1354 | 9..815 | 4020 | 99.9 | Plus |
| nmo-RF | 2757 | CG7892-RF | 1055..1861 | 9..815 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8046570..8047026 | 359..815 | 2270 | 99.8 | Plus |
| 3L | 28110227 | 3L | 7980819..7980983 | 9..173 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 8039874..8040006 | 172..304 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8045891..8045950 | 303..362 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:40 has no hits.
MXO03682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:38 Download gff for
MXO03682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7892-PA | 1..812 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:54 Download gff for
MXO03682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1049..1866 | 1..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:52 Download gff for
MXO03682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1049..1866 | 1..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:52 Download gff for
MXO03682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7980813..7980982 | 1..172 | 98 | -> | Plus |
| 3L | 8039875..8040004 | 173..302 | 100 | -> | Plus |
| 3L | 8045891..8045946 | 303..358 | 100 | -> | Plus |
| 3L | 8046570..8047031 | 359..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:54 Download gff for
MXO03682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7973913..7974082 | 1..172 | 98 | -> | Plus |
| arm_3L | 8032975..8033104 | 173..302 | 100 | -> | Plus |
| arm_3L | 8038991..8039046 | 303..358 | 100 | -> | Plus |
| arm_3L | 8039670..8040131 | 359..821 | 99 | | Plus |
