MXO03683.5prime Sequence
877 bp (795 high quality bases) assembled on 2007-06-27
> MXO03683.5prime
CAGTCGACATGTCATTTCGCGTAGTGCGCAGTTCCAAGTTCCGCCACGTC
TACGGACAGGCTCTCAAGCGGGAGCAGTGCTACGACAACATACGGGTATC
CAAGTCCAGCTGGGACTCCACATTCTGCGCGGTGAATCCCAAGTTCCTGG
CCATTATCGTAGAGTCGGCGGGCGGCGGAGCCTTCATCGTCCTGCCACAC
AACAAAGTTGGTCGCATTGCGGCTGACCACCCTTTGGTGGGCGGTCACAA
GGGTCCTGTGCTGGACATCGCCTGGTGCCCCCACAACGACAACGTGATCG
CCTCCGGCTCAGAGGACTGTGTGGTCAAAGTGTGGCAGATCCCCGATGGC
GGGCTGTCGCGAACACTCACCGAACCCGTGGTCGACCTGGTTTTCCACCA
GCGTCGCGTGGGTCTGGTGTTGTGGCATCCCTCTGCGCTCAACGTGCTGC
TTACCGCCGGCTCCGATAACCAGGTCGTGATTTGGAACGTGGGCACTGGT
GAAATCCTCGTGCACATCGACTCCCATCCGGACATCGTTTACAGCGCCTG
CTTCAACTGGGATGGCTCTAAGTTGGTTACCACCTGCAAGGATAAAAAGA
TCCGCATCTACGATCCGCGCACTGCCGAGCTGGAGAGCGAAGCCATGTGT
CATGAGGGCTCCAAGGCCACGAGGGCCATTTTCCTACGTCACGGTCTGAT
CTTCACCACAGGCTTCAACCGTAGCTCGGAGCGTCAGTACTCCCTGCGCG
CACCGGATGCCCTTAACGAACCCATTGTCATGGTGGAGCTGGACACGTCC
AACGGCGTAATGTTCCCTCTTTACGACGCAGACACGAACATGATCTACTT
GTGTGGAAAAGGTGACTCGGTCATTCG
MXO03683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9446-PA | 1587 | coro-RA | 1..869 | 9..877 | 4320 | 99.8 | Plus |
| CG9446-PB | 1587 | coro-RB | 1..869 | 9..877 | 4320 | 99.8 | Plus |
| CG9446-PC | 1587 | coro-RC | 1..869 | 9..877 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| coro-RG | 2769 | CG9446-RG | 101..969 | 9..877 | 4330 | 99.9 | Plus |
| coro-RF | 2794 | CG9446-RF | 126..994 | 9..877 | 4330 | 99.9 | Plus |
| coro-RE | 2696 | CG9446-RE | 287..1155 | 9..877 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6864646..6865051 | 877..472 | 2030 | 100 | Minus |
| 2R | 25286936 | 2R | 6865106..6865374 | 475..207 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 6866685..6866884 | 208..9 | 985 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:36 has no hits.
MXO03683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:45 Download gff for
MXO03683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9446-PC | 1..869 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:43 Download gff for
MXO03683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RE | 280..1155 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:50 Download gff for
MXO03683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| coro-RE | 280..1155 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:50 Download gff for
MXO03683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6864646..6865049 | 474..877 | 100 | <- | Minus |
| 2R | 6865108..6865374 | 207..473 | 100 | <- | Minus |
| 2R | 6866687..6866891 | 1..206 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:43 Download gff for
MXO03683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2752151..2752554 | 474..877 | 100 | <- | Minus |
| arm_2R | 2752613..2752879 | 207..473 | 100 | <- | Minus |
| arm_2R | 2754192..2754396 | 1..206 | 98 | | Minus |
