MXO03684.5prime Sequence
820 bp (762 high quality bases) assembled on 2007-06-27
> MXO03684.5prime
CAGTCGACATGCCGCTGCTATTTACCGGCTTCAACGCATTTGGCCAGCAT
GAATGTGTAAGCGGCGACGTCGACTGCGCAGCCGGCTTCAGCGAATTAAA
TGCGCCAGTCTCGACTCAGAACCAGTGCACGATTTCGATCGGCTGGCGGT
ATGCGGCCCTCGCTTTTGGCCGGAAGTTGTGCCTGCGTGGGCTCTTGGAT
GATGGCCCAAATGAGTGCGTGACCCTGGAAGCAACGGGGAACATAAGGGC
CCTTGCCGCTGCCGATTCCCACTGCCTGGTGCTACTCCAAAGCGGTCAGC
TTTACAGGGTGCAACCAAAACTGCAAGCGGAACTGGTGGCTGTTAGACTA
GAAGCTGCTCCCAGATCCAATTCGGGTACAAAGCGCTCTATCTTTGGGGC
TGCCAAGGCGCCTTCGTCGCCGATCATAGAGCATATTGCATGTGGATCGC
ACATAAACGTAGCGATAAGTTCGGAAAACTGTGTCTACAGCATTCCCAGC
TGCCTGCATCAGTTTTCCGAGCGCCAATTTCGGGTGAAGCAGCTCCAATG
CGGCCATGAACATGCCGTGCTCCTCAATGCCAATGGCGACGTGTTCACCT
GGGGAAATGGACTACGCGGACAGTTGGGTCTGGCGGAACTGAGAGTGGAG
GAGACGCCTCAATTGCTGGAGGCGCTGGCGGGGATCAAGATAACTCAAAT
TGCTGCCGGTGGTTGGCACAGTGCGGCCATATCCGCCTTTGGAGACCTCT
ACACCTGGGGCCTCAACTGCAGCGGTCAGCTGGGATTGCGTGTGATGAAA
CCCGGTGGCGTCCTCAAAGA
MXO03684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6678-PA | 1122 | CG6678-RA | 1..812 | 9..820 | 4035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6678-RA | 2843 | CG6678-RA | 479..1290 | 9..820 | 4045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21888034..21888554 | 93..613 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 21888837..21888969 | 688..820 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 21887507..21887591 | 9..93 | 410 | 98.8 | Plus |
| 3R | 32079331 | 3R | 21888703..21888778 | 614..689 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:43 has no hits.
MXO03684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:53 Download gff for
MXO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-PA | 1..811 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:37 Download gff for
MXO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 474..1289 | 2..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:14 Download gff for
MXO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 474..1289 | 2..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:14 Download gff for
MXO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21887502..21887591 | 2..93 | 94 | -> | Plus |
| 3R | 21888035..21888554 | 94..613 | 100 | -> | Plus |
| 3R | 21888703..21888778 | 614..689 | 100 | -> | Plus |
| 3R | 21888839..21888968 | 690..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:37 Download gff for
MXO03684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17713224..17713313 | 2..93 | 94 | -> | Plus |
| arm_3R | 17713757..17714276 | 94..613 | 100 | -> | Plus |
| arm_3R | 17714425..17714500 | 614..689 | 100 | -> | Plus |
| arm_3R | 17714561..17714690 | 690..819 | 100 | | Plus |
