MXO03686.5prime Sequence
795 bp (789 high quality bases) assembled on 2007-06-27
> MXO03686.5prime
CAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTACCGGCGCC
AGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAACTCGGAGG
GCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGAGACGGCCG
ACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGCAGGCGGAC
ATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACTCTGGCCAA
GCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCTGGAGACAG
GCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGATGAACACC
AATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCAGAGCTAGT
CAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGGACTGCGTG
CCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGGTGGACCAG
TTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTCCGCGTAAA
CGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCGTGGCGGCA
TGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGATAACCCAC
GCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCCATTGCCTT
CCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCTGCCCGTCG
ATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAGACC
MXO03686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PA | 774 | CG31549-RA | 1..771 | 9..779 | 3855 | 100 | Plus |
CG31548-PA | 771 | CG31548-RA | 610..715 | 621..726 | 305 | 91.5 | Plus |
CG12171-PA | 774 | CG12171-RA | 658..767 | 666..775 | 200 | 87.2 | Plus |
CG31548-PA | 771 | CG31548-RA | 367..426 | 378..437 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 66..836 | 9..779 | 3855 | 100 | Plus |
CG31549-RA | 1130 | CG31549-RA | 205..975 | 9..779 | 3855 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 75..832 | 18..775 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632396..5633166 | 9..779 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 5633701..5634458 | 18..775 | 970 | 75.2 | Plus |
3R | 32079331 | 3R | 5634825..5635142 | 725..408 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:39 has no hits.
MXO03686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:01 Download gff for
MXO03686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..774 | 9..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:15 Download gff for
MXO03686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:17 Download gff for
MXO03686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..975 | 1..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:17 Download gff for
MXO03686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632387..5633166 | 1..779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:15 Download gff for
MXO03686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458109..1458888 | 1..779 | 99 | | Plus |