Clone MXO03686 Report

Search the DGRC for MXO03686

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:36
Well:86
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31549-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03686.5prime Sequence

795 bp (789 high quality bases) assembled on 2007-06-27

> MXO03686.5prime
CAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTACCGGCGCC
AGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAACTCGGAGG
GCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGAGACGGCCG
ACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGCAGGCGGAC
ATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACTCTGGCCAA
GCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCTGGAGACAG
GCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGATGAACACC
AATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCAGAGCTAGT
CAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGGACTGCGTG
CCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGGTGGACCAG
TTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTCCGCGTAAA
CGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCGTGGCGGCA
TGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGATAACCCAC
GCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCCATTGCCTT
CCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCTGCCCGTCG
ATGGAGGTCGTCACGCCATGTGCCCGCGAGCAAGCTTTCTAGACC

MXO03686.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PA 774 CG31549-RA 1..771 9..779 3855 100 Plus
CG31548-PA 771 CG31548-RA 610..715 621..726 305 91.5 Plus
CG12171-PA 774 CG12171-RA 658..767 666..775 200 87.2 Plus
CG31548-PA 771 CG31548-RA 367..426 378..437 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 66..836 9..779 3855 100 Plus
CG31549-RA 1130 CG31549-RA 205..975 9..779 3855 100 Plus
CG12171-RA 1014 CG12171-RA 75..832 18..775 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632396..5633166 9..779 3855 100 Plus
3R 32079331 3R 5633701..5634458 18..775 970 75.2 Plus
3R 32079331 3R 5634825..5635142 725..408 390 74.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:57:39 has no hits.

MXO03686.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:01 Download gff for MXO03686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..774 9..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:15 Download gff for MXO03686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 1..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:17 Download gff for MXO03686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..975 1..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:17 Download gff for MXO03686.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5632387..5633166 1..779 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:15 Download gff for MXO03686.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458109..1458888 1..779 99   Plus