MXO03687.5prime Sequence
847 bp (820 high quality bases) assembled on 2007-06-27
> MXO03687.5prime
CAGTCGACATGTTCAAGAGGCCATACAACACCACACCAAGCAACAACAAC
AGAACCCAGAACACCATCACCAATCCAAGTCCGAACTCGAATTCGAATCC
GAATCAGAATCAGAATCGGATTCAGAGTCAGATCAATAACACCACACAAG
ATGATTCGCAACGCCGGCAAGTGGAAGCGTATCGCATTTACTACGAAGAA
ATCGTCGTCAAGCAGGCTAATGCCCGTGCTCGTCTTGGCGACAGCAGCAC
ACGTTGCAGCAACAGCATCACCAGCCGCAATACCAGCAGCAGTGGCCGCG
GCAGCAGTTTCGTCGACAAGTTCGCTGACTTTGTGACCCACTCGAGCCGA
ACTTCTCCCATGCCCAATCCCCCTGCCCAGTCCCATGTGCCGCCAACCAC
AAGAAATGCGACTAATGCAATCCTTCCTCCCAAAACAAACAGCAGCAGCA
GCAGCAGCGGCGGCAACAGCAGCAGCAGCGGAGCCACTAGCAACAATGCA
TCCACCGTGGTGAGCAGCAGTGCGAGCAATGGCCTCAAGCCGGCGGCCAA
GAAGACACCAGTCATTCTGCTGGCCGCTCGTGGTGCCGCCAAGCAGCCGC
AGCTCAGCATTCTTAATGGCAACACCAAGGCCGGAACCGGAAATGCAAGC
GGAGGCGGCGGCGGTGTTACATTGGTGCGCGTCAATGCAACCAATCGCAA
TCAGCGCCAAGTTATCGTCGCTCCGGAGGCAACACCTGTGGAACACCAGC
AGCCAGTGGTCGAGGAGGAGATGTTGGCCGAGGACGATGAGCTCGACGAG
GACATGGATGANGATGCAGTTGCCCTGTCCGGGCTCTCCTCCTCGAC
MXO03687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17724-PA | 1557 | CG17724-RA | 1..839 | 9..847 | 4176 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| seq-RB | 5631 | CG32904-RB | 3203..4041 | 9..847 | 4184 | 99.9 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 3290..4128 | 9..847 | 4184 | 99.9 | Plus |
| CG17724-RE | 3779 | CG17724-RE | 892..1730 | 9..847 | 4184 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13178143..13178981 | 847..9 | 4184 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-28 21:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2984 | 26..628 | 225 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2560 | 235..502 | 175 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6822 | 238..318 | 171 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6853 | 238..307 | 170 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6844 | 238..319 | 167 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1158 | 239..318 | 166 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6866 | 242..308 | 164 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2439 | 238..314 | 160 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6790 | 242..307 | 159 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2423 | 239..319 | 153 | 65.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3345 | 210..302 | 134 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2425 | 238..306 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 239..290 | 125 | 71.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..705 | 24..216 | 125 | 58.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1109..1163 | 236..290 | 122 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1483..1552 | 9..72 | 121 | 67.1 | Plus |
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 2532..2567 | 123..88 | 117 | 80.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2837 | 238..307 | 116 | 62.9 | Plus |
| gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 551..606 | 22..77 | 109 | 66.1 | Plus |
MXO03687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:08 Download gff for
MXO03687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-PA | 1..839 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:01 Download gff for
MXO03687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RB | 369..1207 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:46 Download gff for
MXO03687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RE | 892..1730 | 9..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:46 Download gff for
MXO03687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13178143..13178981 | 9..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:01 Download gff for
MXO03687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9065648..9066486 | 9..847 | 99 | | Minus |
