MXO03691.5prime Sequence
890 bp (775 high quality bases) assembled on 2007-06-27
> MXO03691.5prime
CAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGACATGGACG
CGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTCCAGGCGGA
TCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCACTTGCGACT
GCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCGGAAATGTC
TACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAGGCCAATCG
GCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCAGGTGGGCC
AACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATGCCAGCAAT
AAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTGATCGAATC
GCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGGCGGGCGGA
TTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATAGTGCCATA
CTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGTCAAGCCTT
TAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCAATTCCTGG
GCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCAACGAGCTG
AGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCCTTCTCCTT
CAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCTATCCGTCG
ATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAATACGAGGA
AACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTCACCGTTCA
TCGTTCGTATCAGTTGAGCGAGCGTCTGGAGCTGCGTTTC
MXO03691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5541-PA | 1392 | CG5541-RA | 1..882 | 9..890 | 4410 | 100 | Plus |
| CG5541-PB | 1392 | CG5541-RB | 1..882 | 9..890 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5541-RB | 2304 | CG5541-RB | 179..1061 | 8..890 | 4415 | 100 | Plus |
| CG5541-RA | 2514 | CG5541-RA | 389..1271 | 8..890 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15049758..15050139 | 165..546 | 1910 | 100 | Plus |
| X | 23542271 | X | 15050415..15050599 | 706..890 | 925 | 100 | Plus |
| X | 23542271 | X | 15049106..15049265 | 8..167 | 800 | 100 | Plus |
| X | 23542271 | X | 15050200..15050359 | 546..705 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 5301..5354 | 768..716 | 114 | 70.4 | Minus |
MXO03691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:38 Download gff for
MXO03691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5541-PB | 1..882 | 9..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:51 Download gff for
MXO03691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5541-RA | 400..1286 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:57 Download gff for
MXO03691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5541-RA | 385..1271 | 1..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:57 Download gff for
MXO03691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15049102..15049265 | 1..167 | 97 | -> | Plus |
| X | 15049761..15050138 | 168..545 | 100 | -> | Plus |
| X | 15050200..15050359 | 546..705 | 100 | -> | Plus |
| X | 15050415..15050599 | 706..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:51 Download gff for
MXO03691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14943135..14943298 | 1..167 | 97 | -> | Plus |
| arm_X | 14943794..14944171 | 168..545 | 100 | -> | Plus |
| arm_X | 14944233..14944392 | 546..705 | 100 | -> | Plus |
| arm_X | 14944448..14944632 | 706..890 | 100 | | Plus |
