MXO03693.5prime Sequence
845 bp (735 high quality bases) assembled on 2007-06-27
> MXO03693.5prime
CAGTCGACATGCGCGAATGTATCTCTATCCACGTGGGCCAGGCCGGAGTC
CAGATTGGAAATGCCTGCTGGGAGCTCTATTGCCTGGAGCACGGCATCCA
GCCCGATGGCCAGATGCCCTCCGACAAGACCGTAGGCGGAGGTGATGACT
CGTTTAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACGTGCCTCGC
GCCGTGTTCGTGGATCTGGAGCCCACTGTGGTCGACGAGGTCCGTACTGG
AACCTACCGTCAGCTGTTCCACCCCGAGCAACTGATCACCGGTAAGGAGG
ATGCGGCCAACAACTACGCCCGTGGCCACTACACCATTGGCAAGGAGATC
GTCGACCTGGTGCTGGACAGGATCCGCAAGCTGGCCGATCAATGCACCGG
TCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTACCGGCTCCG
GCTTCACCTCGCTCCTGATGGAGCGTCTCTCCGTGGACTACGGCAAGAAG
TCCAAGCTGGAGTTCGCCGTGTACCCAGCTCCGCAGGTGTCCACCGCCGT
GGTGGAGCCCTACAACTCCATCCTAACCACGCACACCACCCTCGAGCACT
CCGACTGCGCCTTTATGGTGGACAACGAGGCCATCTACGACATCTGTCGC
CGAAACCTGGACATCGAACGACCCACTTACACTAACCTGAATCGTTTAAT
CGGCCAAATAGTGTCCTCGATCACCGCCTCTCTGCGATTCGATGGAGCCC
TAAATGTGGACCTCACCGAGTTCCAGACCAACCTGGTTCCTTACCCCCGC
ATCCACTTCCCGCTGGTGACGTACGCTCCCGTCATCTCCGCCGAA
MXO03693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2512-PA | 1353 | alphaTub84D-RA | 1..836 | 9..844 | 4155 | 99.8 | Plus |
| CG2512-PB | 1353 | alphaTub84D-RB | 1..836 | 9..844 | 4155 | 99.8 | Plus |
| CG1913-PA | 1353 | alphaTub84B-RA | 1..683 | 9..691 | 2265 | 93.2 | Plus |
| CG9476-PA | 1350 | alphaTub85E-RA | 40..425 | 48..433 | 905 | 89.3 | Plus |
| CG9476-PA | 1350 | alphaTub85E-RA | 451..638 | 459..646 | 265 | 85.6 | Plus |
| CG1913-PA | 1353 | alphaTub84B-RA | 703..836 | 711..844 | 245 | 87.3 | Plus |
| CG9476-PA | 1350 | alphaTub85E-RA | 730..827 | 738..835 | 140 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1342 | 9..844 | 4165 | 99.9 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 144..979 | 9..844 | 3145 | 91.7 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 102..934 | 8..840 | 2275 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7531259..7532094 | 9..844 | 4165 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7087233..7088066 | 11..844 | 3135 | 91.7 | Plus |
| 3R | 32079331 | 3R | 9732286..9732779 | 529..36 | 1555 | 87.7 | Minus |
| 3R | 32079331 | 3R | 9731847..9732152 | 840..535 | 735 | 82.7 | Minus |
| 3L | 28110227 | 3L | 9682200..9682741 | 276..817 | 610 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:55 has no hits.
MXO03693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:53 Download gff for
MXO03693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2512-PA | 1..835 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:38 Download gff for
MXO03693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 499..1342 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:08 Download gff for
MXO03693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 499..1342 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:08 Download gff for
MXO03693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7531251..7532094 | 1..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:38 Download gff for
MXO03693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3356973..3357816 | 1..845 | 99 | | Plus |
