Clone MXO03694 Report

Search the DGRC for MXO03694

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:36
Well:94
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptTm1-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03694.5prime Sequence

896 bp (833 high quality bases) assembled on 2007-06-27

> MXO03694.5prime
CAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTGGCAGCCAT
ACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGTCGTGGCCA
CCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGTGCCCAATG
TCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGAGCGCCCTG
TCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCACAGCAGCA
GACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCTGCCCCTCA
GTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGCCCACAGAC
GAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCAGCTTTAAT
AGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAAGAGCAAGA
AAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACAAATCTGAG
AAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGCAGCAAACG
ATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGATCTCAGTG
CCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATGACAACCAA
GCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCCGAGATTGT
GGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGATTATCCGG
GACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGATGAAGTTC
AACATCATCCGCAACGAGCTGCACAACATCATGAACACACAACTCAAACG
GGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTC

MXO03694.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PE 2136 Tm1-RE 672..1563 5..896 4460 100 Plus
CG4898-PH 2037 Tm1-RH 708..1599 5..896 4460 100 Plus
CG4898-PI 1326 Tm1-RI 1..888 9..896 4440 100 Plus
CG4898-PC 1326 Tm1-RC 1..888 9..896 4440 100 Plus
CG4898-PA 759 Tm1-RA 145..189 852..896 225 100 Plus
CG4898-PL 855 Tm1-RL 241..285 852..896 225 100 Plus
CG4898-PJ 858 Tm1-RJ 241..285 852..896 225 100 Plus
CG4898-PD 858 Tm1-RD 241..285 852..896 225 100 Plus
CG4898-PG 858 Tm1-RG 241..285 852..896 225 100 Plus
CG4898-PB 1020 Tm1-RB 403..447 852..896 225 100 Plus
CG4898-PF 1506 Tm1-RF 241..285 852..896 225 100 Plus
CG4898-PK 1557 Tm1-RK 241..285 852..896 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 985..1876 5..896 4460 100 Plus
Tm1-RC 2651 CG4898-RC 582..1473 5..896 4460 100 Plus
Tm1-RI 2501 CG4898-RI 432..1323 5..896 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288593..15289440 5..852 4240 100 Plus
3R 32079331 3R 15295112..15295157 851..896 230 100 Plus
Blast to na_te.dros performed 2014-11-28 19:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 638..711 293..221 115 63.5 Minus

MXO03694.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:49:01 Download gff for MXO03694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 702..1599 1..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:24 Download gff for MXO03694.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 426..1323 1..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:53 Download gff for MXO03694.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 426..1323 1..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:53 Download gff for MXO03694.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15288587..15289439 1..851 99 -> Plus
3R 15295113..15295157 852..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:24 Download gff for MXO03694.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114309..11115161 1..851 99 -> Plus
arm_3R 11120835..11120879 852..896 100   Plus