MXO03694.5prime Sequence
896 bp (833 high quality bases) assembled on 2007-06-27
> MXO03694.5prime
CAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTGGCAGCCAT
ACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGTCGTGGCCA
CCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGTGCCCAATG
TCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGAGCGCCCTG
TCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCACAGCAGCA
GACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCTGCCCCTCA
GTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGCCCACAGAC
GAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCAGCTTTAAT
AGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAAGAGCAAGA
AAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACAAATCTGAG
AAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGCAGCAAACG
ATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGATCTCAGTG
CCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATGACAACCAA
GCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCCGAGATTGT
GGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGATTATCCGG
GACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGATGAAGTTC
AACATCATCCGCAACGAGCTGCACAACATCATGAACACACAACTCAAACG
GGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTC
MXO03694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4898-PE | 2136 | Tm1-RE | 672..1563 | 5..896 | 4460 | 100 | Plus |
CG4898-PH | 2037 | Tm1-RH | 708..1599 | 5..896 | 4460 | 100 | Plus |
CG4898-PI | 1326 | Tm1-RI | 1..888 | 9..896 | 4440 | 100 | Plus |
CG4898-PC | 1326 | Tm1-RC | 1..888 | 9..896 | 4440 | 100 | Plus |
CG4898-PA | 759 | Tm1-RA | 145..189 | 852..896 | 225 | 100 | Plus |
CG4898-PL | 855 | Tm1-RL | 241..285 | 852..896 | 225 | 100 | Plus |
CG4898-PJ | 858 | Tm1-RJ | 241..285 | 852..896 | 225 | 100 | Plus |
CG4898-PD | 858 | Tm1-RD | 241..285 | 852..896 | 225 | 100 | Plus |
CG4898-PG | 858 | Tm1-RG | 241..285 | 852..896 | 225 | 100 | Plus |
CG4898-PB | 1020 | Tm1-RB | 403..447 | 852..896 | 225 | 100 | Plus |
CG4898-PF | 1506 | Tm1-RF | 241..285 | 852..896 | 225 | 100 | Plus |
CG4898-PK | 1557 | Tm1-RK | 241..285 | 852..896 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tm1-RH | 3054 | CG4898-RH | 985..1876 | 5..896 | 4460 | 100 | Plus |
Tm1-RC | 2651 | CG4898-RC | 582..1473 | 5..896 | 4460 | 100 | Plus |
Tm1-RI | 2501 | CG4898-RI | 432..1323 | 5..896 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15288593..15289440 | 5..852 | 4240 | 100 | Plus |
3R | 32079331 | 3R | 15295112..15295157 | 851..896 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 638..711 | 293..221 | 115 | 63.5 | Minus |
MXO03694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:49:01 Download gff for
MXO03694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4898-PH | 702..1599 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:24 Download gff for
MXO03694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 426..1323 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:53 Download gff for
MXO03694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tm1-RI | 426..1323 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:53 Download gff for
MXO03694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15288587..15289439 | 1..851 | 99 | -> | Plus |
3R | 15295113..15295157 | 852..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:24 Download gff for
MXO03694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11114309..11115161 | 1..851 | 99 | -> | Plus |
arm_3R | 11120835..11120879 | 852..896 | 100 | | Plus |