MXO03695.5prime Sequence
861 bp (804 high quality bases) assembled on 2007-06-27
> MXO03695.5prime
CAGTCGACATGAACATCGACGACTACCAATCGCTGCCCACCACCAGTGTG
GGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAGCATGTGGT
CATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCTTTCACCGC
CCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGATCACGCGT
GAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTGCTGGGTGC
TGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGACCAAGGAGC
TCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGATTTCGGGA
GCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACGGATGCGAT
CAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGTGGTATCCT
GCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCTACCGGGCA
TATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATACATTTTAC
CACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAAATACAATC
CACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTGCGGCGGCT
GTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACTCAGGAGAC
AGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTACCACATGG
CCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTCTGTACTCA
ATGCCCGCCACGGCCATCTGCTGGTCGACGTACGAGTTCTTCAAGTTCTA
CCTGTGCGGCC
MXO03695.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4963-PA | 1140 | CG4963-RA | 1..853 | 9..861 | 4215 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfrn-RA | 3037 | CG4963-RA | 711..1564 | 8..861 | 4240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27944779..27945015 | 575..339 | 1170 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27944553..27944714 | 737..576 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 27945077..27945203 | 339..213 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 27944269..27944394 | 861..736 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 27947194..27947311 | 125..8 | 575 | 99.2 | Minus |
| 3R | 32079331 | 3R | 27945252..27945342 | 214..124 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:00 has no hits.
MXO03695.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:49:08 Download gff for
MXO03695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4963-PA | 1..853 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:07 Download gff for
MXO03695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfrn-RA | 702..1564 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:50 Download gff for
MXO03695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfrn-RA | 702..1564 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:50 Download gff for
MXO03695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27944269..27944392 | 738..861 | 100 | <- | Minus |
| 3R | 27944553..27944714 | 576..737 | 100 | <- | Minus |
| 3R | 27944779..27945014 | 340..575 | 99 | <- | Minus |
| 3R | 27945077..27945201 | 215..339 | 100 | <- | Minus |
| 3R | 27945252..27945340 | 126..214 | 100 | <- | Minus |
| 3R | 27947194..27947314 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:07 Download gff for
MXO03695.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23769991..23770114 | 738..861 | 100 | <- | Minus |
| arm_3R | 23770275..23770436 | 576..737 | 100 | <- | Minus |
| arm_3R | 23770501..23770736 | 340..575 | 99 | <- | Minus |
| arm_3R | 23770799..23770923 | 215..339 | 100 | <- | Minus |
| arm_3R | 23770974..23771062 | 126..214 | 100 | <- | Minus |
| arm_3R | 23772916..23773036 | 1..125 | 96 | | Minus |
