MXO03696.5prime Sequence
805 bp (787 high quality bases) assembled on 2007-06-27
> MXO03696.5prime
CAGTCGACATGAGTATCTGGCCCATTCCAACACTACCAAATTCCAAAATG
CGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACGGATTGCAC
ATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCCCTGCCACA
AATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGCTCTATGGC
GACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGATGTACAACC
GGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGAGTGCGATA
AACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTGAGTTTGCT
AACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAGGATTTGCT
GATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCTATTCCAGT
GTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAGCCTGGGAG
CTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTATACGAATT
CAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAGCAAAATAT
CGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAATATAATGGT
ATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGATGCAACTGA
AGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAATCAAGAAT
CGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAATGCAGTTTT
GCCGT
MXO03696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11714-PA | 1152 | CG11714-RA | 1..797 | 9..805 | 3960 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11714-RD | 3514 | CG11714-RD | 146..942 | 9..805 | 3970 | 99.9 | Plus |
| CG11714-RA | 1650 | CG11714-RA | 146..942 | 9..805 | 3970 | 99.9 | Plus |
| Fuca-RC | 3513 | CG6128-RC | 146..942 | 9..805 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11521721..11522507 | 805..19 | 3920 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:59 has no hits.
MXO03696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:49:14 Download gff for
MXO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11714-PA | 1..797 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:26 Download gff for
MXO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11714-RA | 140..942 | 1..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:26 Download gff for
MXO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RC | 140..942 | 1..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:26 Download gff for
MXO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11521721..11522513 | 15..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:26 Download gff for
MXO03696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11514821..11515613 | 15..805 | 99 | | Minus |
