MXO03704.5prime Sequence
850 bp (801 high quality bases) assembled on 2007-07-18
> MXO03704.5prime
CAGTCGACATGGACTCCAGCCACATACCCGTGCGAGTGGCACGTCGTAGT
CCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTGGGTTCCAG
CCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAGCGAATCCA
CTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCTCATCCCTC
ACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGCCGAAGGAA
CCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGGACTGCTGG
TCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCTGGAGACAA
ACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCTTGGGTCATGGCAT
ATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGATCCGATCG
GTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAATGCCACGAT
GATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTGGGGGAGCT
GCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGAGGCACAAG
GATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAATAGACTCG
TTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCCATCGATTG
CCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAAGCGTCGGA
TTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATACGGACGCA
CTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCACCAAACGTC
MXO03704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33717-PB | 849 | PGRP-LD-RB | 1..842 | 9..850 | 4160 | 99.7 | Plus |
| CG33717-PA | 849 | PGRP-LD-RA | 1..842 | 9..850 | 4160 | 99.7 | Plus |
| CG33717-PC | 849 | PGRP-LD-RC | 1..842 | 9..850 | 4160 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LD-RC | 3010 | CG33717-RC | 719..1561 | 8..850 | 4185 | 99.8 | Plus |
| PGRP-LD-RA | 3600 | CG33717-RA | 1309..2151 | 8..850 | 4185 | 99.8 | Plus |
| PGRP-LD-RB | 3563 | CG33717-RB | 1272..2114 | 8..850 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5782917..5783236 | 531..850 | 1600 | 100 | Plus |
| 3L | 28110227 | 3L | 5781996..5782308 | 39..351 | 1565 | 100 | Plus |
| 3L | 28110227 | 3L | 5782671..5782849 | 352..530 | 880 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:27 has no hits.
MXO03704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:31 Download gff for
MXO03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33717-PC | 1..842 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:58 Download gff for
MXO03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RB | 1263..2114 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:26 Download gff for
MXO03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LD-RB | 1263..2114 | 1..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:26 Download gff for
MXO03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5781997..5782308 | 40..351 | 100 | -> | Plus |
| 3L | 5782671..5782849 | 352..530 | 99 | -> | Plus |
| 3L | 5782917..5783236 | 531..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:58 Download gff for
MXO03704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5775097..5775408 | 40..351 | 100 | -> | Plus |
| arm_3L | 5775771..5775949 | 352..530 | 99 | -> | Plus |
| arm_3L | 5776017..5776336 | 531..850 | 100 | | Plus |
