MXO03705.5prime Sequence
787 bp (744 high quality bases) assembled on 2007-07-18
> MXO03705.5prime
CAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCGAGAACAGC
GAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACGCCCAAGGA
GAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCCCCCAGCCG
AAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCCTCTTTGTG
TTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACCATCATCAA
CAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGTGGACTGGA
CGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCCCAGGCAGT
TGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTTGGAATCGT
CGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGACCCGTCGC
TCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGGCCCAAGTG
TGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTCGGTCCGGA
CCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCAGCTGGGCG
TGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATTCACCGGAT
CTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTGGTGGCCGG
GCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCAGGACAAAC
CACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCA
MXO03705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1358-PC | 1449 | CG1358-RC | 1..779 | 9..787 | 3895 | 100 | Plus |
| CG1358-PA | 1449 | CG1358-RA | 1..779 | 9..787 | 3895 | 100 | Plus |
| CG1358-PB | 1449 | CG1358-RB | 1..779 | 9..787 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1358-RD | 3094 | CG1358-RD | 371..1149 | 9..787 | 3895 | 100 | Plus |
| CG1358-RB | 2485 | CG1358-RB | 232..1010 | 9..787 | 3895 | 100 | Plus |
| CG1358-RA | 3374 | CG1358-RA | 1121..1899 | 9..787 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7602432..7602657 | 593..368 | 1130 | 100 | Minus |
| 2R | 25286936 | 2R | 7605943..7606088 | 154..9 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 7598216..7598360 | 735..591 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 7603408..7603521 | 265..152 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 7603121..7603225 | 369..265 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 7597614..7597665 | 787..736 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 1011..1089 | 659..583 | 138 | 65.8 | Minus |
| 412 | 7567 | 412 412 7567bp | 1091..1144 | 642..591 | 112 | 70.4 | Minus |
MXO03705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:36 Download gff for
MXO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1358-PB | 1..778 | 9..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:08 Download gff for
MXO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1358-RA | 1103..1886 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:02 Download gff for
MXO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1358-RA | 1115..1898 | 1..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:02 Download gff for
MXO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7597615..7597665 | 736..786 | 100 | <- | Minus |
| 2R | 7598216..7598357 | 594..735 | 100 | <- | Minus |
| 2R | 7602432..7602656 | 369..593 | 100 | <- | Minus |
| 2R | 7603122..7603224 | 266..368 | 100 | <- | Minus |
| 2R | 7603408..7603519 | 154..265 | 100 | <- | Minus |
| 2R | 7605944..7606094 | 1..153 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:08 Download gff for
MXO03705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3489937..3490161 | 369..593 | 100 | <- | Minus |
| arm_2R | 3490627..3490729 | 266..368 | 100 | <- | Minus |
| arm_2R | 3490913..3491024 | 154..265 | 100 | <- | Minus |
| arm_2R | 3493449..3493599 | 1..153 | 97 | | Minus |
| arm_2R | 3485120..3485170 | 736..786 | 100 | <- | Minus |
| arm_2R | 3485721..3485862 | 594..735 | 100 | <- | Minus |
