MXO03707.5prime Sequence
802 bp (763 high quality bases) assembled on 2007-07-18
> MXO03707.5prime
CAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGAACAACATG
CGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAAGAGGCGGA
AGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCGCGAGATTC
GCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCACCGCCGAC
CGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAAACTCTGTC
GGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGTGACCCGTG
CATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGGAGGGCAGA
AGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAGCGGTTTCG
CAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGCCTCGCAGG
CCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGGAAGAGTCG
TATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGACTGCAATGC
CCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCTAGTACAAG
GGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCCTTCTAATT
GTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCTCTAGTGAG
TGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGGGTTCTTTAGACGTTA
GACTTAAAAAGTTCACTGACGAGAAGCAGCGGCTGCTGGCGGAGGTGCAT
AA
MXO03707.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8578-PA | 1191 | CG8578-RA | 1..791 | 9..799 | 3930 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8578-RC | 1847 | CG8578-RC | 112..902 | 9..799 | 3940 | 99.9 | Plus |
| CG8578-RB | 1474 | CG8578-RB | 92..882 | 9..799 | 3940 | 99.9 | Plus |
| CG8578-RA | 1615 | CG8578-RA | 112..902 | 9..799 | 3940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15845982..15846347 | 379..744 | 1830 | 100 | Plus |
| X | 23542271 | X | 15845640..15845927 | 94..381 | 1440 | 100 | Plus |
| X | 23542271 | X | 15845382..15845469 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 15846407..15846463 | 743..799 | 270 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:20 has no hits.
MXO03707.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:41 Download gff for
MXO03707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-PA | 1..791 | 9..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:18 Download gff for
MXO03707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 83..884 | 1..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:18 Download gff for
MXO03707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8578-RA | 104..905 | 1..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:18 Download gff for
MXO03707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15845374..15845468 | 1..95 | 95 | -> | Plus |
| X | 15845642..15845926 | 96..380 | 100 | -> | Plus |
| X | 15845984..15846347 | 381..744 | 100 | -> | Plus |
| X | 15846409..15846466 | 745..802 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:18 Download gff for
MXO03707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15739407..15739501 | 1..95 | 95 | -> | Plus |
| arm_X | 15739675..15739959 | 96..380 | 100 | -> | Plus |
| arm_X | 15740017..15740380 | 381..744 | 100 | -> | Plus |
| arm_X | 15740442..15740499 | 745..802 | 96 | | Plus |
