MXO03709.5prime Sequence
815 bp (747 high quality bases) assembled on 2007-07-18
> MXO03709.5prime
CAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCCGGGATCCC
CGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGCGGAGTCCT
GACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCAGAACCGTC
GGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACACGGAGCGC
GGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATTCCCTACGC
CACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAATCTTCTGCT
TCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTGACCAGGTT
TTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATTTTCGTAAT
AATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTTCGTCGGAT
TTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGTGGCGGTCG
CGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATAACCTACCT
GCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGTGGTTACCT
TCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGCACTCTCAA
AGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCAAACACGAA
ACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGCATTCTGCA
AAGACGGTGTTGAGAACGCCGAGGTGATGTTTATATTGGCCACTCTGTCC
ACCCTTTTGGTGCTG
MXO03709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7540-PA | 945 | M6-RA | 1..807 | 9..815 | 4035 | 100 | Plus |
| CG7540-PB | 945 | M6-RB | 1..807 | 9..815 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| M6-RF | 2370 | CG7540-RF | 624..1430 | 9..815 | 4035 | 100 | Plus |
| M6-RC | 2174 | CG7540-RC | 428..1234 | 9..815 | 4035 | 100 | Plus |
| M6-RB | 1945 | CG7540-RB | 199..1005 | 9..815 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21511308..21511613 | 370..675 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 21510079..21510281 | 9..211 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 21511089..21511251 | 209..371 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 21511670..21511809 | 676..815 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:43 has no hits.
MXO03709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:47 Download gff for
MXO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7540-PB | 1..807 | 9..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:41 Download gff for
MXO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1005 | 1..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:04 Download gff for
MXO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| M6-RB | 195..1005 | 1..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:04 Download gff for
MXO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21510075..21510280 | 1..210 | 98 | -> | Plus |
| 3L | 21511091..21511250 | 211..370 | 100 | -> | Plus |
| 3L | 21511309..21511613 | 371..675 | 100 | -> | Plus |
| 3L | 21511670..21511809 | 676..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:41 Download gff for
MXO03709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21503175..21503380 | 1..210 | 98 | -> | Plus |
| arm_3L | 21504191..21504350 | 211..370 | 100 | -> | Plus |
| arm_3L | 21504409..21504713 | 371..675 | 100 | -> | Plus |
| arm_3L | 21504770..21504909 | 676..815 | 100 | | Plus |
