MXO03711.5prime Sequence
846 bp (838 high quality bases) assembled on 2007-07-18
> MXO03711.5prime
CAGTCGACATGCGCTATCAATGCACCCATGATGCCGGCTATGATACGGAA
CACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGACGGGAGCT
ACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCCCGAGGGTT
TTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGTCGCCGGAG
TTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTGGAGCGGGC
AAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTTCCAGGACT
TTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTA
CACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCT
AAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCATGGAGA
TCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGC
TGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTT
CTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCA
TACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATC
TGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGG
TTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTC
ATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGA
AGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCG
MXO03711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33166-PB | 1458 | stet-RB | 163..1000 | 9..846 | 4165 | 99.8 | Plus |
| CG33166-PA | 993 | stet-RA | 1..535 | 312..846 | 2675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stet-RB | 2380 | CG33166-RB | 350..1187 | 9..846 | 4175 | 99.9 | Plus |
| stet-RA | 1898 | CG33166-RA | 171..705 | 312..846 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1476690..1476995 | 846..541 | 1530 | 100 | Minus |
| 3L | 28110227 | 3L | 1477050..1477288 | 549..311 | 1165 | 99.2 | Minus |
| 3L | 28110227 | 3L | 1487754..1487936 | 316..134 | 900 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1488098..1488190 | 110..18 | 450 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:25 has no hits.
MXO03711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:45:52 Download gff for
MXO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33166-PB | 156..1000 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:19 Download gff for
MXO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RB | 343..1187 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:23 Download gff for
MXO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stet-RB | 343..1187 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:23 Download gff for
MXO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1487759..1487935 | 135..311 | 100 | <- | Minus |
| 3L | 1488006..1488029 | 111..134 | 100 | <- | Minus |
| 3L | 1488098..1488195 | 12..110 | 96 | | Minus |
| 3L | 1477057..1477287 | 312..542 | 100 | <- | Minus |
| 3L | 1476690..1476993 | 543..846 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:19 Download gff for
MXO03711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1476690..1476993 | 543..846 | 100 | <- | Minus |
| arm_3L | 1477057..1477287 | 312..542 | 100 | <- | Minus |
| arm_3L | 1487759..1487935 | 135..311 | 100 | <- | Minus |
| arm_3L | 1488006..1488029 | 111..134 | 100 | <- | Minus |
| arm_3L | 1488098..1488195 | 12..110 | 96 | | Minus |
