MXO03715.5prime Sequence
806 bp (657 high quality bases) assembled on 2007-07-18
> MXO03715.5prime
CAGTCGACATGAACTATTTTTCCCTTCCCTCGCACAAAAAACATCGCGGC
CATCCGTCAGCAGGACCGAGCAATGCGTACCAGAACCTGGAAAAAACCTC
GGTGCTTCAGGAGACGCGCACCTTCAATGAGACGCCGGTGAACCCAAGGA
AGTGCATCCACATCCTGACCAAAATCCTGTACCTGATTAATCAGGGTGAG
CAGCTTGTGGCCCGCGAGGCCACCGACTGCTTTTTTGCGATGACGAAGCT
CTTCCAATCTAAGGACGTGGTGCTGCGTCGTATGGTATACCTGGGCATCA
AGGAGCTGAGCTCCATTGCCGAGGACGTCATCATCGTGACTAGCTCGCTA
ACGAAGGATATGACCGGCAAGGAAGACCTGTACAGGGCCGCCGCAATCCG
GGCCTTGTGCAGCATCACGGATAACACCATGTTGCAGGCCGTGGAGCGCT
ACATGAAGCAGTGCATTGTTGACAAAAACGCGGCAGTTTCTTGTGCTGCA
TTGGTCAGTTCTTTGAGATTGGCCAACACTGCCGGCGACGTGGTCAAGAG
GTGGGCAAACGAGGCCCAGGAGGCTTTGAACAGCGACAACATTATGGTAC
AGTACCACGCGTTGGGTCTGCTCTACCATATCCGCAAGTCGGATCGGCTG
GCTGTCTCCAAGTTGGTCAACAAGCTGACCAGAGGATCTCTAAAGAGTCC
CTATGCCGTTTGCATGCTGATACGCATTGCCTGTAAGCTGATCGAGGAGG
AGGACATTCCCTCTGAGGAGCTTTCCGATTCACCCTTGTTTACGTTCATC
GAGTCC
MXO03715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1528-PB | 2652 | gammaCop-RB | 1..798 | 9..806 | 3965 | 99.8 | Plus |
| CG1528-PA | 2640 | gammaCop-RA | 40..786 | 60..806 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-RB | 3276 | CG1528-RB | 302..1101 | 7..806 | 3985 | 99.9 | Plus |
| gammaCOP-RA | 3057 | CG1528-RA | 136..882 | 60..806 | 3735 | 100 | Plus |
| gammaCOP-RD | 3054 | CG1528-RD | 136..879 | 63..806 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31572444..31573156 | 7..719 | 3550 | 99.9 | Plus |
| 3R | 32079331 | 3R | 31573253..31573340 | 719..806 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:05 has no hits.
MXO03715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:07 Download gff for
MXO03715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1528-PB | 1..798 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:47 Download gff for
MXO03715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 296..1101 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:11 Download gff for
MXO03715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCOP-RB | 296..1101 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:11 Download gff for
MXO03715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31572438..31573156 | 1..719 | 99 | -> | Plus |
| 3R | 31573254..31573340 | 720..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:47 Download gff for
MXO03715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27398160..27398878 | 1..719 | 99 | -> | Plus |
| arm_3R | 27398976..27399062 | 720..806 | 100 | | Plus |
