MXO03716.5prime Sequence
825 bp (770 high quality bases) assembled on 2007-07-18
> MXO03716.5prime
CAGTCGACATGGTGAACCACCACTCGCACGGAGGCGGCAGTGCTGGAAAC
AGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGCGGCGGAGG
AGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGAGCGGGAGC
GTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGGAACACCTG
GCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCGGCGGACGG
AATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTGGTCGCAGA
AGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGGACTATGAA
ACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAGGAGCCCAC
CGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACATTCTGGTCT
TTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACATATTCCAG
TCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAGCAGCTGAG
AAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCACTCAATCAG
GAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAACCTCCTCG
TCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAGCAGCGGGC
AGAGCGCGAGAGGGAGCGTGATCGAGACCGTGAGCGCGAAAGCCACCATC
ACATGCACCAAAGGAGCAGCATGGAACAGTATGGAATCCGTGCCGGAATA
GGAGTTTCTGGCGATGACGTTGCCC
MXO03716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4276-PA | 2418 | aru-RA | 81..898 | 8..825 | 4040 | 99.7 | Plus |
| CG4276-PD | 2337 | aru-RD | 1..817 | 9..825 | 4035 | 99.7 | Plus |
| CG4276-PC | 2337 | aru-RC | 1..817 | 9..825 | 4035 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RC | 2903 | CG4276-RC | 249..1066 | 8..825 | 4060 | 99.8 | Plus |
| aru-RD | 3026 | CG4276-RD | 372..1189 | 8..825 | 4060 | 99.8 | Plus |
| aru-RA | 2922 | CG4276-RA | 268..1085 | 8..825 | 4060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 864398..864746 | 356..8 | 1730 | 99.7 | Minus |
| 2L | 23513712 | 2L | 863810..864137 | 825..498 | 1625 | 99.7 | Minus |
| 2L | 23513712 | 2L | 864195..864339 | 500..356 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:53 has no hits.
MXO03716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:17 Download gff for
MXO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4276-PA | 74..898 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:39 Download gff for
MXO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 261..1085 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:13 Download gff for
MXO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 261..1085 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:13 Download gff for
MXO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 863810..864134 | 501..825 | 99 | <- | Minus |
| 2L | 864195..864338 | 357..500 | 100 | <- | Minus |
| 2L | 864398..864749 | 1..356 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:39 Download gff for
MXO03716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 863810..864134 | 501..825 | 99 | <- | Minus |
| arm_2L | 864195..864338 | 357..500 | 100 | <- | Minus |
| arm_2L | 864398..864749 | 1..356 | 98 | | Minus |
