MXO03719.5prime Sequence
868 bp (798 high quality bases) assembled on 2007-07-18
> MXO03719.5prime
CAGTCGACATGGGCGAACTCGAGGAGCAGGAAACCCCGCCCACTGAGACG
ACAGCCGCCCAGCAAGAGGCGCTAGAGGAGCCCAAGGAAACGGACAAAAT
GTTGGACAAAAAAGAGGACGCCAAGGAGAAGACACCCAGTCCACAGACCT
CCAAGCCCGCATCTCCAAATGCCGGCAAGAAATCCTCACCAGTGGCCGAG
AAAAAGATCGACGATGCTGAATTAGCGAAATCCAAATCAGGCAATGGAGA
AGAGATTATCGATATTCCCGCCGAGAATGGCACAAAGCCAGACAGCGCTG
ATGACAAAAAGATAAGCAAGGAGGAGCGCGAGGTCAAGCCCAAAAAGATA
CCGATCGGAGGTCTCAAACTGCCTGGTTTCTTCATGAAGAACAAGCCGAA
GGCAGATGGTGATGGGGCCGAGGGCGAGCTGCTCGAAAAGGAGAAGGAAG
AGGATAAGGATAAGGAAGCCAATGGAGATGCCGCCACCGGTTCCGGCAAG
GACGAACAGAAATCTCGCCCAGGACTGGGAGAACGCCTGCGCAGCTTCTT
TGCCCGCAAGCCATCCGCCGAAAAGGAAAAGAAGCAGCTGGTCAACGGTG
ACGCGGATGCCAAGTCTGAAGCCACAGCTGAAGCAACGCCCGCTGAAGAT
GCCTCCGATGCACCACCAAAGCGTGGACTTTTGAACGCCATCAAGCTGCC
AATCGCTAACATGATACCGAAAAAGAAGAGCAACGATGATGTGGAGCTGG
GCTTGGGCAAGGCCGGTCTGGCCTCGATGGAGACCCTCGATGATTCCCTT
AAGGATCAAGACACAGTGGATCGGGCTCCCGTCAAGACCAACGGTACCGA
GGAAACTAAGGGCGAGCT
MXO03719.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9704-PB | 2541 | Nrt-RB | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG9704-PA | 2541 | Nrt-RA | 1..846 | 9..854 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-RC | 3523 | CG9704-RC | 513..1372 | 9..868 | 4240 | 99.7 | Plus |
| Nrt-RA | 3177 | CG9704-RA | 167..1026 | 9..868 | 4240 | 99.7 | Plus |
| Nrt-RB | 4158 | CG9704-RB | 513..1372 | 9..868 | 4240 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16773757..16774366 | 9..618 | 3035 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16774429..16774679 | 618..868 | 1210 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 660..700 | 433..473 | 115 | 75.6 | Plus |
MXO03719.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:40 Download gff for
MXO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9704-PA | 1..860 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:18 Download gff for
MXO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 503..1372 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:20 Download gff for
MXO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 503..1372 | 1..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:20 Download gff for
MXO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16773747..16774366 | 1..618 | 99 | -> | Plus |
| 3L | 16774430..16774679 | 619..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:18 Download gff for
MXO03719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16766847..16767466 | 1..618 | 99 | -> | Plus |
| arm_3L | 16767530..16767779 | 619..868 | 99 | | Plus |
