MXO03720.5prime Sequence
850 bp (832 high quality bases) assembled on 2007-07-18
> MXO03720.5prime
CAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACCCCTCCACC
AGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCAGTGGTCCA
CTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGAGAGGAGCA
CTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGCTGGCGCGT
AAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGAGTGCCCAA
GCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGCCGTAAATC
TAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACCAAGTGCCA
TTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATATCGCCAAA
GATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGATAATGCTT
TGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAGTGCGCCTT
AATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATGTACAGTCT
ACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGTCGAACTTA
ATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACGGTGGGCAT
AACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTGCGTCTAAC
TGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCCCGATCTTG
TTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATGATCTGACC
AGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATTGCCTTTATCT
MXO03720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9611-PA | 2082 | CG9611-RA | 126..971 | 5..850 | 4230 | 100 | Plus |
| CG9611-PB | 1953 | CG9611-RB | 1..842 | 9..850 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RH | 2795 | CG9611-RH | 240..1085 | 5..850 | 4230 | 100 | Plus |
| f-cup-RG | 2797 | CG9611-RG | 240..1085 | 5..850 | 4230 | 100 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 328..1173 | 5..850 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13699068..13699306 | 243..5 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 13697834..13698039 | 639..434 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 13698091..13698283 | 434..242 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 13697523..13697647 | 762..638 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 13697377..13697464 | 850..763 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:30:26 has no hits.
MXO03720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:47 Download gff for
MXO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9611-PA | 122..971 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:54 Download gff for
MXO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RF | 324..1173 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:23 Download gff for
MXO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RF | 324..1173 | 1..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:23 Download gff for
MXO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13699068..13699308 | 1..243 | 99 | | Minus |
| 3R | 13697835..13698038 | 435..638 | 100 | <- | Minus |
| 3R | 13698091..13698281 | 244..434 | 100 | <- | Minus |
| 3R | 13697377..13697464 | 763..850 | 100 | <- | Minus |
| 3R | 13697523..13697646 | 639..762 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:54 Download gff for
MXO03720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9523099..9523186 | 763..850 | 100 | <- | Minus |
| arm_3R | 9523245..9523368 | 639..762 | 100 | <- | Minus |
| arm_3R | 9523557..9523760 | 435..638 | 100 | <- | Minus |
| arm_3R | 9523813..9524003 | 244..434 | 100 | <- | Minus |
| arm_3R | 9524790..9525030 | 1..243 | 99 | | Minus |
