MXO03723.5prime Sequence
839 bp (828 high quality bases) assembled on 2007-07-18
> MXO03723.5prime
CAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATATCTGGCATC
GAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCCTTCCTCGC
CCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGTGCGCCGCG
GCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACTTCTTTGAT
CTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTACAATACTA
CATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCATCGAACTCA
AGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGTTTCATGGC
AATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGGGGCAAGAA
TGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGACTTCGTCC
TTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTCGATGGCAG
GACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACCTTGTCGGA
ACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTGCGGAACCG
TGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGGCGGCCGGC
ATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGGGAGGAATT
CGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAACGAGGGCT
ACAAACAGGAGAACCGCCTCAAGAATCGCTACCGCAACATATTGCCATAC
GACCACACGCGCGTCAAGCTGCTGGACGTGGAGCATAGC
MXO03723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3954-PA | 2526 | csw-RA | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG3954-PB | 2838 | csw-RB | 630..1131 | 338..839 | 2510 | 100 | Plus |
| CG3954-PC | 2049 | csw-RC | 1..354 | 486..839 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csw-RA | 4560 | CG3954-RA | 172..1002 | 9..839 | 4155 | 100 | Plus |
| csw-RD | 7119 | CG3954-RD | 707..1524 | 22..839 | 4090 | 100 | Plus |
| csw-RC | 4106 | CG3954-RC | 46..548 | 337..839 | 2515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2095008..2095199 | 21..212 | 960 | 100 | Plus |
| X | 23542271 | X | 2109227..2109415 | 493..681 | 930 | 99.5 | Plus |
| X | 23542271 | X | 2108378..2108543 | 336..501 | 830 | 100 | Plus |
| X | 23542271 | X | 2095269..2095396 | 210..337 | 640 | 100 | Plus |
| X | 23542271 | X | 2109481..2109600 | 679..798 | 600 | 100 | Plus |
| X | 23542271 | X | 2109725..2109769 | 795..839 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:47 has no hits.
MXO03723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:00 Download gff for
MXO03723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3954-PA | 1..831 | 9..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:11 Download gff for
MXO03723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 167..1002 | 2..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:12 Download gff for
MXO03723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 167..1002 | 2..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:12 Download gff for
MXO03723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2109235..2109414 | 501..680 | 100 | -> | Plus |
| X | 2109483..2109600 | 681..798 | 100 | -> | Plus |
| X | 2109729..2109769 | 799..839 | 100 | | Plus |
| X | 2095010..2095197 | 23..210 | 100 | -> | Plus |
| X | 2095270..2095396 | 211..337 | 100 | -> | Plus |
| X | 2108380..2108542 | 338..500 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:11 Download gff for
MXO03723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1989043..1989230 | 23..210 | 100 | -> | Plus |
| arm_X | 1989303..1989429 | 211..337 | 100 | -> | Plus |
| arm_X | 2002413..2002575 | 338..500 | 100 | -> | Plus |
| arm_X | 2003268..2003447 | 501..680 | 100 | -> | Plus |
| arm_X | 2003516..2003633 | 681..798 | 100 | -> | Plus |
| arm_X | 2003762..2003802 | 799..839 | 100 | | Plus |
