MXO03728.5prime Sequence
866 bp (775 high quality bases) assembled on 2007-07-18
> MXO03728.5prime
CAGTCGACATGCCGCGTGTAGCCAACCCTAAAGCCGCCGCTCCGGCCAAG
AAGGTGGTGTCGGCCAAGAAGGCCAAGAGCAAGCTGTACAAGATGCCGGA
GACGGTGAAGGAGGGCACAGTTTTCACCGATTTAGCCAAAGGCCAGTGGC
GCATTGGACCCTCGATCGGAGTTGGAGGATTCGGTGAGATCTACGCGGCT
TGCAAAGTGGGTGAGAAGAACTACGATGCTGTGGTCAAATGCGAGCCACA
TGGCAATGGTCCTCTGTTCGTGGAGATGCACTTCTACCTGCGCAACGCCA
AGCTGGAGGACATCAAACAGTTCATGCAGAAGCTCGGTCTCAAGTCCCTG
GGCATGCCCTACATACTGGCTAATGGTTCCGTGGATTTTTTTGCCCAACA
GCATCGATTTATAGTCATGCCGCGCTACGGCAGCGATTTGACCAAGTTTC
TGGAACAGAACGGCAAGCGACTGCCCGAGGGCACTGTCTACCGACTGGCC
ATTCAGATGCTGGACGTCTATCAGTACATGCACAGCAACGGCTACGTTCA
TGCCGATCTTAAGGCAGCCAACATACTGCTGGGCCTGGAAAAAGGCGGCG
CTGCGCAGGCGTACCTGGTGGATTTCGGCCTGGCCTCACACTTCGTCACC
GGTGACTTCAAGCCGGACCCCAAGAAGATGCATAATGGCACCATAGAATA
CACATCAAGGGATGCTCATCTGGGCGTGCCAACCAGACGAGCTGATCTGG
AGATACTCGGTTACAATCTCATCGAGTGGCTGGGCGCGGAGTTGCCGTGG
GTCACGCAGAAACTACTGGCTGTACCCCCCAAAGTTCAAAAGGCCAAGGA
AGCATTTATGGATAAC
MXO03728.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6386-PA | 1800 | ball-RA | 392..858 | 400..866 | 2335 | 100 | Plus |
| CG6386-PB | 1800 | ball-RB | 392..858 | 400..866 | 2335 | 100 | Plus |
| CG6386-PA | 1800 | ball-RA | 1..377 | 9..385 | 1785 | 98.9 | Plus |
| CG6386-PB | 1800 | ball-RB | 1..377 | 9..385 | 1785 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ball-RB | 1965 | CG6386-RB | 102..959 | 9..866 | 4095 | 98.5 | Plus |
| ball-RA | 2027 | CG6386-RA | 164..1021 | 9..866 | 4095 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26865611..26866234 | 866..243 | 2970 | 98.4 | Minus |
| 3R | 32079331 | 3R | 26866290..26866524 | 243..9 | 1130 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:56 has no hits.
MXO03728.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:19 Download gff for
MXO03728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6386-PB | 1..858 | 9..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:37 Download gff for
MXO03728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1021 | 1..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:48 Download gff for
MXO03728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ball-RA | 158..1021 | 1..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:48 Download gff for
MXO03728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26866291..26866530 | 1..242 | 97 | | Minus |
| 3R | 26865611..26866234 | 243..866 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:37 Download gff for
MXO03728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22691333..22691956 | 243..866 | 98 | <- | Minus |
| arm_3R | 22692013..22692252 | 1..242 | 97 | | Minus |
