MXO03731.5prime Sequence
813 bp (774 high quality bases) assembled on 2007-07-18
> MXO03731.5prime
CAGTCGACATGTCCAGCTGGGCAGAACGCGTCCATAGGCGCGCCGCGGAT
TTGGGCAACGTGGTGACCTCCTGCGGCCACCCAGCCACCGCTCCCGCCTA
CCCGTACCGCCTCGAAAAGGTCAAATTCGGTGTGCCGCTGGAGGAGGTGT
GCAAGCACAACAACAACATTCCCGGGCCCCTGCTCGTCCTGATCCTCAAA
CTGAACAAGGAGTCACCGAACCGCCGCGATGTATTCCGCGCACCCGGCCA
CCAGGGCGCAATGAAGAAGCTCATCCACTTCCTGCAGGCCGGTCGGCTCG
TCAACGTGGACAACTATTCGGTGTTCACCATCGCCAGCGTGCTCAAGAAG
TTCCTGCGCAAGATCCCCAATGGGATATTCGGGCGCATCGGCGAGATGGA
GCTGTTCGCCATCAATGATCTGCAAAACGAAGCCGAGCAAACGGAGCGAC
TGCACAGACTCTTCGGTTCGCTGCCGAAATACACACAGCATCTATTAGTT
CTACTGTTCGGCACATTCCGGGTTATCGCGAGCAATGCGGCCCACGCCTC
CACCGGAATGACCAGCGAGGCGCTGGGCGTTTCCGTGGCCCCCAGTTTCT
TTCAATCCTGCGTCAGCGATGGCAAAACCGCCCGCATGGAGGATGTGCTC
AAGTTCAAGGTCTCTACGAAGATTATGCAGAATATAATTGATAAGTTTGC
CACGCACGACATCTTCGGGCGCGACAACTATGAGTACTACGCCCGCGTCA
CAGGACGCATTCTCAAGGTGCAGGACGAGTGGATATGCAGCTTTCAGTAT
CCACCACCGCCAC
MXO03731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32149-PB | 1815 | RhoGAP71E-RB | 1..805 | 9..813 | 4000 | 99.8 | Plus |
| CG32149-PA | 1821 | RhoGAP71E-RA | 1..805 | 9..813 | 4000 | 99.8 | Plus |
| CG32149-PC | 2691 | RhoGAP71E-RC | 1..805 | 9..813 | 4000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP71E-RG | 4053 | CG32149-RG | 688..1493 | 8..813 | 4015 | 99.9 | Plus |
| RhoGAP71E-RF | 4498 | CG32149-RF | 688..1493 | 8..813 | 4015 | 99.9 | Plus |
| RhoGAP71E-RE | 4934 | CG32149-RE | 688..1493 | 8..813 | 4015 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15589547..15589996 | 8..457 | 2235 | 99.8 | Plus |
| 3L | 28110227 | 3L | 15600413..15600619 | 455..661 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 15600686..15600841 | 658..813 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:31 has no hits.
MXO03731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:24 Download gff for
MXO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32149-PC | 1..805 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:21 Download gff for
MXO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP71E-RE | 688..1493 | 8..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:27 Download gff for
MXO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP71E-RE | 688..1493 | 8..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:27 Download gff for
MXO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15589547..15589996 | 8..457 | 99 | -> | Plus |
| 3L | 15600416..15600617 | 458..659 | 100 | -> | Plus |
| 3L | 15600688..15600841 | 660..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:21 Download gff for
MXO03731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15582647..15583096 | 8..457 | 99 | -> | Plus |
| arm_3L | 15593516..15593717 | 458..659 | 100 | -> | Plus |
| arm_3L | 15593788..15593941 | 660..813 | 100 | | Plus |
