MXO03732.5prime Sequence
832 bp (767 high quality bases) assembled on 2007-07-18
> MXO03732.5prime
CAGTCGACATGGTCCTGGCATCTTTGCCCACTGGTGTGATTGCTCGCATT
ATGCATGGCGAGGTTGTGGATGCCCCGGTTCTCCAGATCCTGGCAATCAA
GAAGATTAACAGCGCAGCGGACTCAGAGCGCTATCGCATCCTAATCTCCG
ACGGCAAGTACTTTAACAGCTATGCGATGCTGGCCAGTCAGCTGAACGTG
ATGCAGCACAATGGAGAATTAGAGGAGTTCACCATTGTCCAGCTAGATAA
ATATGTGACCTCACTGGTAGGCAAGGACGGAGCCGGAAAACGCGTTCTCA
TCATTTCCGAACTAACTGTGGTGAATCCTGGCGCCGAGGTTAAGTCCAAA
ATTGGCGAACCCGTTACGTATGAAAATGCAGCCAAGCAGGATCTGGCGCC
TAAGCCAGCAGTAACATCTAATTCCAAGCCAATTGCCAAAAAGGAACCGA
GCCACAACAACAATAATAACATAGTAATGAATTCCTCTATTAATAGTGGA
ATGACACATCCCATTTCTAGCCTAAGTCCCTACCAAAATAAGTGGGTGAT
TAAGGCTCGCGTGACCTCAAAATCCGGCATTCGCACCTGGAGCAATGCCC
GCGGCGAGGGCAAGTTGTTCAGCATGGATTTAATGGACGAATCGGGCGAA
ATTCGGGCCACTGCCTTCAAGGAACAGTGCGATAAGTTCTACGACCTCAT
TCAAGTGGATAGCGTGTACTATATATCAAAGTGTCAATTGAAACCGGCAA
ACAAGCAGTACTCTTCGCTGAACAACGCCTACGAGATGACTTTTTCCGGT
GAAACAGTTGTCCAGCTTTGTGAGGATACCGA
MXO03732.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9633-PA | 1812 | RpA-70-RA | 1..824 | 9..832 | 4095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpA-70-RA | 2135 | CG9633-RA | 82..905 | 9..832 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8263429..8263971 | 832..290 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 8264029..8264273 | 289..45 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:10 has no hits.
MXO03732.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:31 Download gff for
MXO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9633-PA | 1..823 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:46 Download gff for
MXO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 74..904 | 1..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:22 Download gff for
MXO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpA-70-RA | 74..904 | 1..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:22 Download gff for
MXO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8263430..8263971 | 290..831 | 100 | <- | Minus |
| 3R | 8264029..8264273 | 45..289 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:46 Download gff for
MXO03732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4089152..4089693 | 290..831 | 100 | <- | Minus |
| arm_3R | 4089751..4089995 | 45..289 | 100 | <- | Minus |
