MXO03733.5prime Sequence
847 bp (753 high quality bases) assembled on 2007-07-18
> MXO03733.5prime
CAGTCGACATGGCAACACTTAACAAATTCACAAAAACGCTGTCCATTGAT
GAAAAGGCGGAGATCAAGGAGAAATTCATAGAGTTGGATGCCAACAAAGA
TGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGCT
TCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGGGC
AAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGGC
ACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGACGG
TCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCATT
TCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCTT
CTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCTGCAACATC
TGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGAT
GGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGACACAATCGA
TGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAGA
ACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCAACATCGTA
AACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTGGTGCTGGG
TCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACATCACCCTGG
ACAGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAACGTCTCGAG
GATCTGATGAAGATGTCGCCGGAGGCCATCCTTTTGCGTTGGGTCAA
MXO03733.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8649-PA | 1923 | Fim-RA | 1..839 | 9..847 | 4195 | 100 | Plus |
| CG8649-PC | 1851 | Fim-RC | 3..767 | 83..847 | 3825 | 100 | Plus |
| CG8649-PD | 1926 | Fim-RD | 79..842 | 84..847 | 3820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RA | 3387 | CG8649-RA | 496..1334 | 9..847 | 4195 | 100 | Plus |
| Fim-RC | 3269 | CG8649-RC | 452..1216 | 83..847 | 3825 | 100 | Plus |
| Fim-RD | 3236 | CG8649-RD | 420..1183 | 84..847 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17288274..17289039 | 847..82 | 3830 | 100 | Minus |
| X | 23542271 | X | 17301360..17301434 | 83..9 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:55 has no hits.
MXO03733.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:37 Download gff for
MXO03733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8649-PA | 1..837 | 9..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:24 Download gff for
MXO03733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 488..1332 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:24 Download gff for
MXO03733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RA | 488..1332 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:24 Download gff for
MXO03733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17288276..17289037 | 84..845 | 100 | <- | Minus |
| X | 17301360..17301442 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:24 Download gff for
MXO03733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17182309..17183070 | 84..845 | 100 | <- | Minus |
| arm_X | 17195393..17195475 | 1..83 | 96 | | Minus |
