MXO03734.5prime Sequence
863 bp (806 high quality bases) assembled on 2007-07-18
> MXO03734.5prime
CAGTCGACATGGACAAGATGCGGATACTGAAGGAAAGTCGCCCCGAGATA
ATCGTCGGTGGCAAATATCGGGTGATCAGGAAGATTGGAAGCGGATCGTT
TGGCGACATTTACCTGGGCATGAGCATCCAGAGCGGCGAAGAAGTGGCCA
TCAAGATGGAGAGCGCCCACGCCCGCCATCCGCAGCTGTTGTACGAGGCC
AAGCTGTACCGCATTCTGAGCGGCGGCGTTGGATTCCCTCGTATACGTCA
CCATGGCAAGGAAAAGAACTTCAACACCCTGGTCATGGACCTGCTGGGAC
CCTCGCTGGAGGATCTGTTCAATTTCTGTACGCGCCATTTCACAATCAAA
ACGGTTCTGATGCTCGTCGACCAGATGATCGGACGCTTGGAGTACATCCA
TCTCAAGTGCTTCATCCATCGCGACATCAAGCCGGATAACTTCCTAATGG
GCATTGGTCGGCACTGCAATAAGCTGTTCCTGATCGATTTCGGTCTGGCC
AAGAAGTTCCGCGATCCGCACACGCGCCATCACATCGTTTACCGCGAGGA
CAAGAACCTCACCGGCACTGCCCGCTATGCCTCGATCAATGCCCATCTGG
GCATCGAGCAGTCGCGGCGTGACGACATGGAATCGCTTGGATACGTGATG
ATGTACTTCAATCGCGGCGTACTGCCATGGCAAGGCATGAAGGCCAACAC
CAAGCAGCAGAAATACGAGAAGATCTCCGAAAAGAAGATGTCCACGCCCA
TCGAGGTCCTCTGCAAGGGCTCGCCGGCCGAGTTCTCCATGTATCTGAAC
TATTGTCGTAGCCTGCGCTTCGAGGAGCAGCCAGATTACATGTACCTACG
TCAATTGTTCCGC
MXO03734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2028-PB | 1014 | CkIalpha-RB | 1..855 | 9..863 | 4250 | 99.8 | Plus |
| CG2028-PC | 1014 | CkIalpha-RC | 1..855 | 9..863 | 4250 | 99.8 | Plus |
| CG2028-PA | 1014 | CkIalpha-RA | 1..855 | 9..863 | 4250 | 99.8 | Plus |
| CG2048-PA | 1323 | dco-RA | 369..410 | 410..451 | 185 | 97.6 | Plus |
| CG2048-PB | 1323 | dco-RB | 369..410 | 410..451 | 185 | 97.6 | Plus |
| CG2048-PC | 1323 | dco-RC | 369..410 | 410..451 | 185 | 97.6 | Plus |
| CG2048-PA | 1323 | dco-RA | 509..548 | 550..589 | 150 | 95 | Plus |
| CG2048-PB | 1323 | dco-RB | 509..548 | 550..589 | 150 | 95 | Plus |
| CG2048-PC | 1323 | dco-RC | 509..548 | 550..589 | 150 | 95 | Plus |
| CG2577-PA | 1035 | CG2577-RA | 403..434 | 420..451 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIalpha-RG | 1997 | CG2028-RG | 202..1056 | 9..863 | 4260 | 99.9 | Plus |
| CkIalpha-RF | 1997 | CG2028-RF | 202..1056 | 9..863 | 4260 | 99.9 | Plus |
| CkIalpha-RD | 2232 | CG2028-RD | 437..1291 | 9..863 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12655377..12656152 | 87..862 | 3880 | 100 | Plus |
| 3R | 32079331 | 3R | 31057085..31057613 | 808..280 | 665 | 75 | Minus |
| X | 23542271 | X | 12655238..12655317 | 9..88 | 385 | 98.8 | Plus |
| 2L | 23513712 | 2L | 17555095..17555188 | 504..411 | 230 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:34 has no hits.
MXO03734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:47:42 Download gff for
MXO03734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2028-PA | 1..855 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:15 Download gff for
MXO03734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RA | 334..1192 | 1..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:33 Download gff for
MXO03734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIalpha-RD | 433..1291 | 1..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:33 Download gff for
MXO03734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12655234..12655316 | 1..87 | 94 | -> | Plus |
| X | 12655378..12656152 | 88..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:15 Download gff for
MXO03734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12549267..12549349 | 1..87 | 94 | -> | Plus |
| arm_X | 12549411..12550185 | 88..863 | 99 | | Plus |
