MXO03739.5prime Sequence
846 bp (764 high quality bases) assembled on 2007-07-18
> MXO03739.5prime
CAGTCGACATGTCCTTCTACACGAGTCATACGGATGTGACTTCCATTTTA
AAGACGTTTTCTGGCGTAAAACGAAATCAGGCAAATGCCGTGGCCATCAA
CAAAGTTCGATTTTCCACACCCAAAGAGAAGGGGCTCGCAGAATCAGTGC
GCGTTGCCCTAGAAGAACGAAATTTCCATCTGGTCAAGGAGTTCACATAC
TTCCTCCGGGAAGCAGAACTCAGCGATGATGAGGTTGTAATAATCATAAA
AGATGCTAAACGAATTGTTCATAATTTGACTCCAGAATTTGTAACCGTTG
TCGAGGCGTTACTGTCCCTTAACTGGAAGAAAAGAAGTTCAGAGATAATC
GAAGCTTATACTGAATTTTGTATCGAACTAATGGTGATCCATAATACATA
TTTACCGATTGGAGTCTCTAAACTAATTGTCCACTGGATTCCTGGAGATA
TGGATGAATCCGATTGGGTCCACGGATGCCCTTCGGAGCACGTGCGAAAT
GAGTTGAAACCCATCCATAAAGTACTGGATCGCATCTTAACTGCCGTGCC
AATGGCTTTCGATATTATCATAGATGCCATATCCGCCAAATTCCCCTATT
TCAAAAAGCCGTACCATGTGACGGCAGGGTATCTGTATAACGTGCTTTGG
TTATTAGAATACAAGCCTATTTTCGAAGAACTTGTTTTTCAACTAGTTTT
ACAAAAGCTTTTATTATTAGATGTTAATGCTCCAAAAGATGAAATTGAAT
TAGAAATGAATGATGAGGAGGAAAAGGTGGAAGCGGACACCTTGTTTGAA
ATCGACGATGTATGCGCCGAAAATGTACCCCAATCTGAAAAATCTG
MXO03739.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3278-PA | 1836 | Tif-IA-RA | 1..838 | 9..846 | 4065 | 99.4 | Plus |
| CG3278-PB | 357 | Tif-IA-RB | 1..328 | 9..336 | 1590 | 99.3 | Plus |
| CG3278-PB | 357 | Tif-IA-RB | 329..357 | 398..426 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tif-IA-RA | 2140 | CG3278-RA | 224..1061 | 9..846 | 4115 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22250372..22250854 | 225..707 | 2385 | 99.6 | Plus |
| 2L | 23513712 | 2L | 22250099..22250315 | 9..225 | 1055 | 99.1 | Plus |
| 2L | 23513712 | 2L | 22253194..22253333 | 707..846 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:34 has no hits.
MXO03739.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:08 Download gff for
MXO03739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3278-PA | 1..838 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:03 Download gff for
MXO03739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 224..1061 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:32 Download gff for
MXO03739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tif-IA-RA | 224..1061 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:32 Download gff for
MXO03739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22250099..22250314 | 9..224 | 99 | -> | Plus |
| 2L | 22250372..22250853 | 225..706 | 99 | -> | Plus |
| 2L | 22253194..22253333 | 707..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:03 Download gff for
MXO03739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22250099..22250314 | 9..224 | 99 | -> | Plus |
| arm_2L | 22253194..22253333 | 707..846 | 99 | | Plus |
| arm_2L | 22250372..22250853 | 225..706 | 99 | -> | Plus |
