Clone MXO03740 Report

Search the DGRC for MXO03740

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:37
Well:40
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptmrj-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03740.5prime Sequence

388 bp (386 high quality bases) assembled on 2007-07-18

> MXO03740.5prime
CAATCGACATGGTTGACTACTATAAACCTTTGAATGTTTCGCGATCCGCT
ACCGATAGTGAAGTGAAGAAGGCATATCGAAAACTGGCACTAAAATGGCA
CCCACACAAGAATCCCGACAACCTGGATGAGGCCAACAAACGCTTCCGCG
AGCTGTCCGAAGCCTACGAAGTTCTTTCCGATGAGAAAAAGCGTCGCATA
TACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAGAGTCGCTC
GCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTTCGATATTT
TGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGTTCCGTGAG
TTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTTTT

MXO03740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8448-PD 780 mrj-RD 1..377 9..385 1785 98.9 Plus
CG8448-PB 780 mrj-RB 1..377 9..385 1785 98.9 Plus
CG8448-PC 780 mrj-RC 1..377 9..385 1785 98.9 Plus
CG8448-PA 780 mrj-RA 1..377 9..385 1785 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
mrj-RA 1929 CG8448-RA 180..558 7..385 1835 98.9 Plus
mrj-RC 2143 CG8448-RC 394..772 7..385 1835 98.9 Plus
mrj-RB 2126 CG8448-RB 377..755 7..385 1835 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16204830..16205032 385..183 1015 100 Minus
2R 25286936 2R 16205710..16205819 183..74 535 99.1 Minus
2R 25286936 2R 16205901..16205967 73..7 290 95.5 Minus
Blast to na_te.dros performed on 2014-11-28 22:49:37 has no hits.

MXO03740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:13 Download gff for MXO03740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8448-PA 1..377 9..388 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:05 Download gff for MXO03740.5prime
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 372..755 1..388 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:33 Download gff for MXO03740.5prime
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 372..755 1..388 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:33 Download gff for MXO03740.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16204827..16205031 184..388 98 <- Minus
2R 16205710..16205819 74..183 99 <- Minus
2R 16205901..16205972 1..73 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:05 Download gff for MXO03740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12092332..12092536 184..388 98 <- Minus
arm_2R 12093215..12093324 74..183 99 <- Minus
arm_2R 12093406..12093477 1..73 91   Minus