MXO03741.5prime Sequence
595 bp (461 high quality bases) assembled on 2007-07-18
> MXO03741.5prime
CAATCGACATGACGTCTATGGAGCACCCTCGTTTACGAAACTTCAAAAAC
AAAGGGAAAGACCAGGATGAAATGCGACGTCGGAGAAATGAAGTCACCGT
TGACCTGAGGAAGAACAAGCGCGAAGAGACCATTCTCAAGCGTCGCAATG
TGCCCAATTTGGACTCGAACACAGATGAGGAGGAGCAGTTGTCCTCGTCC
ATTGACCTGAAGAAGCTGGCAAAGGCAGCCGCAGACACCACCAAGCCGGA
ACAGCAACTGGCCGCTGTTCAGGCTGCCCGCAAGCTGCTGTCGTCGGACA
AGAATCCACCCATCAACGATCTGATCCGAAGCGACATTCTGCCCATCCTG
GTGGAGTGCCTCAAACAACACAATCACACAATGCTCTTTTTCGAGGCCGC
CTGGGCCCTGACCAACATTGCCTCTGGCACATCGGCTCAAACCAACGAGG
TTGTTGCCGCCGGTGCCGTGCCGCTCTTCCTTCAATTTCTCAACTCGCCC
GCTCCCAATGTTTGCGAACTAGCCGTGTGGGCCCTGGGCAACATCATAGG
AGATGGTCGTTTGCTCCGCGATTTTGTCATTAAGCACGGAGTCAT
MXO03741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9423-PA | 1545 | Kap-alpha3-RA | 21..378 | 29..386 | 1690 | 98.8 | Plus |
| CG9423-PB | 1545 | Kap-alpha3-RB | 21..378 | 29..386 | 1690 | 98.8 | Plus |
| CG9423-PC | 1545 | Kap-alpha3-RC | 21..378 | 29..386 | 1690 | 98.8 | Plus |
| CG9423-PA | 1545 | Kap-alpha3-RA | 382..585 | 390..593 | 895 | 97.5 | Plus |
| CG9423-PB | 1545 | Kap-alpha3-RB | 382..585 | 390..593 | 895 | 97.5 | Plus |
| CG9423-PC | 1545 | Kap-alpha3-RC | 382..585 | 390..593 | 895 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kap-alpha3-RD | 2261 | CG9423-RD | 207..791 | 9..593 | 2700 | 97.4 | Plus |
| Kap-alpha3-RC | 2663 | CG9423-RC | 129..713 | 9..593 | 2700 | 97.4 | Plus |
| Kap-alpha3-RB | 2728 | CG9423-RB | 194..778 | 9..593 | 2700 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9576766..9577148 | 451..69 | 1810 | 98.2 | Minus |
| 3R | 32079331 | 3R | 9576564..9576709 | 593..448 | 670 | 97.3 | Minus |
| 3R | 32079331 | 3R | 9577207..9577267 | 69..9 | 245 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:00 has no hits.
MXO03741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:17 Download gff for
MXO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9423-PC | 1..587 | 9..595 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:15 Download gff for
MXO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 186..780 | 1..595 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:18 Download gff for
MXO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kap-alpha3-RB | 186..780 | 1..595 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:18 Download gff for
MXO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9576562..9576707 | 450..595 | 96 | <- | Minus |
| 3R | 9576768..9577148 | 69..449 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:15 Download gff for
MXO03741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5402284..5402429 | 450..595 | 96 | <- | Minus |
| arm_3R | 5402490..5402870 | 69..449 | 98 | <- | Minus |
