MXO03745.5prime Sequence
854 bp (828 high quality bases) assembled on 2007-07-18
> MXO03745.5prime
CAGTCGACATGATGTTGCAATCCTTGAGTCTGCACGCGGATAAACTAAGC
GGCAATTCACCAGCAGCAGCAGCAGCAACTGGAGCAGCAGCAGCAACATC
AGAGGCAACAGCAGTAGCATCCGCAGCAGCAGCAACAACAATGCTTGCAA
CGGCACCTGTTGCCCATGTTGCTAATGGCAACAACAGCAATTCGAGTGCC
GGCAGCAGCAGCAACAGCAACAGCAGCAGCAACAACCACAGCCTCTACAG
CAATAACAATTTAAATACAGGCAACAATAGCCAGCAGCAGCAGCAGCAGC
AGCAGCAACATCCGCAAATACTGCCGGTCAAGTACGAGTATTTAGAGAAT
CTAACGAGCTCGGGCGCAACTTCAGGTGCCATTGCAGCGACAACAACTTT
CACGGGAGCTGCGAAAAGTTTTCATCCCTATTTGCGGCCCACCGGCAGTG
GCAGCAACAGCAACAACAGCATCGCAGCATTATCTACAACAACGGCAGCA
ACAGCGGCTAAAATGTCGACAACATTGTTTGAGACACTCTTGCACAACCA
AATAAATTCCAGCCCAATAGCACTGCCAGCAGCAACGGCAATCGCAGCAA
TATCTGCAGCAGCAACAGCAGCAACAGCAACACCAGGCACCGCAGCAACC
GCAGCAGCTGCCGCTGCAGCAGCACCGTCAACGCAGCTGAATTCCAGCAT
TAATTCCAGAACTTCATTAGGCGACCAGGGTGGTGCAATTGTTGTTGTTA
CCCCCGCACCACCCGTTGCTGCACCACCAACTGGCGGCCCAAATCGCAAC
CAAAGTCCCACGCGTGACTGCTCGGTCAAAATGGAGCTCATGGAATCGAC
CAGC
MXO03745.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31761-PE | 2682 | bru-2-RE | 1..846 | 9..854 | 4230 | 100 | Plus |
| CG31761-PC | 1899 | bru-2-RC | 1..846 | 9..854 | 4230 | 100 | Plus |
| CG31761-PA | 1899 | bru-2-RA | 1..846 | 9..854 | 4230 | 100 | Plus |
| CG31761-PD | 2214 | bru-2-RD | 1..846 | 9..854 | 4230 | 100 | Plus |
| CG33988-PA | 3726 | CG33988-RA | 119..153 | 282..316 | 150 | 97.1 | Plus |
| CG12071-PB | 1737 | CG12071-RB | 1195..1233 | 279..317 | 145 | 94.8 | Plus |
| CG34127-PA | 3447 | CG34127-RA | 3391..3424 | 282..315 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RM | 4146 | CG43065-RM | 532..1377 | 9..854 | 4230 | 100 | Plus |
| bru-2-RL | 4177 | CG43065-RL | 532..1377 | 9..854 | 4230 | 100 | Plus |
| bru-2-RK | 4085 | CG43065-RK | 908..1753 | 9..854 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12351996..12352783 | 9..796 | 3940 | 100 | Plus |
| 2L | 23513712 | 2L | 12358040..12358098 | 796..854 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2856 | 71..682 | 576 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6923 | 40..251 | 410 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7226 | 58..513 | 379 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..7217 | 179..660 | 366 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6923 | 108..315 | 361 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6910 | 125..326 | 353 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2983 | 58..524 | 292 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2688..2968 | 44..316 | 260 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1153 | 178..259 | 187 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1623 | 179..268 | 184 | 68.9 | Plus |
MXO03745.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:34 Download gff for
MXO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31761-PC | 1..846 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:18 Download gff for
MXO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RK | 908..1753 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:52 Download gff for
MXO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RK | 908..1753 | 9..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:52 Download gff for
MXO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12351996..12352783 | 9..796 | 100 | -> | Plus |
| 2L | 12358041..12358098 | 797..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:18 Download gff for
MXO03745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12351996..12352783 | 9..796 | 100 | -> | Plus |
| arm_2L | 12358041..12358098 | 797..854 | 100 | | Plus |
