Clone MXO03747 Report

Search the DGRC for MXO03747

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:37
Well:47
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptpolo-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03747.5prime Sequence

867 bp (831 high quality bases) assembled on 2007-07-18

> MXO03747.5prime
CAGTCGACATGGCCGCGAAGCCCGAGCATAAGAGCACGGATATTCCGGAT
CGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATGCGGTTCTT
CGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGTGGAAACCG
ACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGATCAAACAC
AATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGCAGCCTTAA
CCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTCGCAGAATA
TCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGGAGCTGCAC
AAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTACATTTACCA
GATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTATCCATCGAG
ATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACGTGAAGATC
GGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAGCGAAAAAA
GACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCTCACCAAGA
AGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCGTCATGTAC
ACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTGAAGGATAC
GTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTACTTAAGGA
AACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATCCGGAGAGC
CGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTTCTTCAGGGCTCAAA
GGTGCCCATGTTCTTGC

MXO03747.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12306-PA 1731 polo-RA 1..859 9..867 4195 99.5 Plus
CG12306-PB 1731 polo-RB 1..859 9..867 4195 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
polo-RB 2324 CG12306-RB 264..1122 9..867 4235 99.5 Plus
polo-RA 2980 CG12306-RA 657..1515 9..867 4235 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20311335..20311869 333..867 2630 99.4 Plus
3L 28110227 3L 20311047..20311273 106..332 1135 100 Plus
3L 28110227 3L 20310310..20310409 9..108 485 99 Plus
Blast to na_te.dros performed on 2014-11-28 20:02:52 has no hits.

MXO03747.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:44 Download gff for MXO03747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12306-PB 1..859 9..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:22 Download gff for MXO03747.5prime
Subject Subject Range Query Range Percent Splice Strand
polo-RA 650..1515 1..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:43 Download gff for MXO03747.5prime
Subject Subject Range Query Range Percent Splice Strand
polo-RA 650..1515 1..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:43 Download gff for MXO03747.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20311335..20311869 333..867 99   Plus
3L 20310303..20310408 1..107 95 -> Plus
3L 20311049..20311273 108..332 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:22 Download gff for MXO03747.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20303403..20303508 1..107 95 -> Plus
arm_3L 20304149..20304373 108..332 100 -> Plus
arm_3L 20304435..20304969 333..867 99   Plus