MXO03748.5prime Sequence
657 bp (657 high quality bases) assembled on 2007-07-18
> MXO03748.5prime
CAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGACGGCTGAC
GACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTAAATATGGA
AGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGAAGGCCTCA
TACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATTACGGACGC
ATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCACGAAGGCGC
CTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTCCTTATCAG
TCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCGATGCCCAA
AGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAACGAACTGGT
CGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGTCAAATTGC
GTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACGATTTTGTG
CCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTCATCACCGT
CACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGGCAATAGGA
AAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAGCAAGCTTT
CTAGACC
MXO03748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6033-PE | 636 | drk-RE | 1..633 | 9..641 | 3165 | 100 | Plus |
| CG6033-PC | 636 | drk-RC | 1..633 | 9..641 | 3165 | 100 | Plus |
| CG6033-PB | 636 | drk-RB | 1..633 | 9..641 | 3165 | 100 | Plus |
| CG6033-PA | 636 | drk-RA | 1..633 | 9..641 | 3165 | 100 | Plus |
| CG6033-PF | 636 | drk-RF | 1..633 | 9..641 | 3165 | 100 | Plus |
| CG6033-PD | 636 | drk-RD | 1..633 | 9..641 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drk-RD | 2795 | CG6033-RD | 404..1036 | 9..641 | 3165 | 100 | Plus |
| drk-RF | 2577 | CG6033-RF | 186..818 | 9..641 | 3165 | 100 | Plus |
| drk-RA | 2744 | CG6033-RA | 353..985 | 9..641 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13496981..13497153 | 641..469 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 13497368..13497537 | 470..301 | 835 | 99.4 | Minus |
| 2R | 25286936 | 2R | 13497613..13497732 | 304..185 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 13497792..13497891 | 184..85 | 500 | 100 | Minus |
| 2R | 25286936 | 2R | 13501813..13501890 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:01 has no hits.
MXO03748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:48:56 Download gff for
MXO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6033-PD | 1..636 | 9..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:41 Download gff for
MXO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drk-RA | 346..988 | 1..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:52 Download gff for
MXO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drk-RA | 346..988 | 1..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:52 Download gff for
MXO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13496978..13497151 | 471..645 | 98 | <- | Minus |
| 2R | 13497368..13497533 | 305..470 | 100 | <- | Minus |
| 2R | 13497613..13497732 | 185..304 | 100 | <- | Minus |
| 2R | 13497792..13497889 | 87..184 | 100 | <- | Minus |
| 2R | 13501813..13501897 | 1..86 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:41 Download gff for
MXO03748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9384483..9384656 | 471..645 | 98 | <- | Minus |
| arm_2R | 9384873..9385038 | 305..470 | 100 | <- | Minus |
| arm_2R | 9385118..9385237 | 185..304 | 100 | <- | Minus |
| arm_2R | 9385297..9385394 | 87..184 | 100 | <- | Minus |
| arm_2R | 9389318..9389402 | 1..86 | 96 | | Minus |
