MXO03756.5prime Sequence
838 bp (812 high quality bases) assembled on 2007-07-18
> MXO03756.5prime
CAGTCGACATGAGCTCGACGCAGGAAAAACCGGAGGAGCTGGACAGGATC
CAGAAGAGGGTCAACAAGATCCTTGAGGCTCGCCTGGAGTCGGACAAGGA
CACATTGGATGCTCTGAGTGGTCTGTCCACTTTCTTCACGGAGAATACGC
TGCAGAATCGCAGGAATCTGCGTAGCCAGATCGAACACCGCTCCGTGGGC
ATCAACGAGAACTTTCTGAAGGCCTTCCGCCAGGTGAAGCTCTCGCTGGA
TGCCGTGTGCGAAGATCTGGACACGATGGCCACGTCAGTAGAGACGATGA
AATCGGATCTGGAGACCTCAAAGGCGCTCACCAAGGATCTGATCAAGCAG
ACCAACACCATGCAGCGGGAGAGGGACCGCTTGGATGTGCATAACCAGAT
TGCGCAAGCTTTTCTGGCTCGTTTTCAGCTAAGCGGAGCCGAGCACCAGT
TACTATATGGCGCTGCCAAAGATGCACCCATTGTGGCGGACTTCTTTCGC
GTATTGGACAGAGTACAAAGCATTCACGCTGACTGCCGGCTGCTGATGCA
GTGTGGATACCAAACAGCAGCCATCGACATCATGGAGGAGATGACATTGC
ATCAGGAGGGCGCTCTGGAAAGGCTCTACCGATGGACTCAGAACCACTGT
CGCAGTTTGGAAAACAACGAAATAGGTCCGCTGATTGTGGAAGCCATGAG
CCGGCTGCAGGACCGTCCGGTGCTATTCAAATACGTCATTGACGAATACG
CCATTGCGAGAAGAGCGGTTTTGGTGCGTCAGTTCATTGAGGCCTTGACG
GAAGGGGGTCCTGGAGGGAACCCAAGCCCATTGAGCTG
MXO03756.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1968-PA | 1893 | CG1968-RA | 1..815 | 9..823 | 4025 | 99.7 | Plus |
| CG1968-PB | 1002 | CG1968-RB | 1..815 | 9..823 | 4025 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1968-RB | 2087 | CG1968-RB | 22..852 | 9..838 | 4100 | 99.6 | Plus |
| CG1968-RA | 2028 | CG1968-RA | 22..852 | 9..838 | 4100 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9286994..9287627 | 97..730 | 3140 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9287683..9287791 | 731..838 | 495 | 99.1 | Plus |
| 2R | 25286936 | 2R | 9286848..9286938 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:05 has no hits.
MXO03756.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:49:31 Download gff for
MXO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-PB | 1..831 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:31 Download gff for
MXO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RA | 22..852 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:30 Download gff for
MXO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1968-RA | 22..852 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:30 Download gff for
MXO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9286848..9286937 | 9..98 | 100 | -> | Plus |
| 2R | 9286996..9287627 | 99..730 | 99 | -> | Plus |
| 2R | 9287683..9287791 | 731..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:31 Download gff for
MXO03756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5174353..5174442 | 9..98 | 100 | -> | Plus |
| arm_2R | 5174501..5175132 | 99..730 | 99 | -> | Plus |
| arm_2R | 5175188..5175296 | 731..838 | 99 | | Plus |
