MXO03758.5prime Sequence
872 bp (744 high quality bases) assembled on 2007-07-18
> MXO03758.5prime
CAGTCGACATGCTGGAAACCGGTGACGAGGCTGAGATGCTGGCCGGTTTC
ACCAGTTCAGATGTTGGCCCCGAGGCGAAGGAATATAATTTACTGCGCGC
CGATGAGGAATACCGCAATGGCAATGTGGAGCACTCAATTTACTACCAGG
TTAAAGCCCAGTTCCAGTCCACCGATCTGCGTTACCTTACCGAATCGGCG
GAACTGGAAAATCAGCGTCCCACCGCAGAGGAGCTGATCAAATCAGCCAC
TAAACTGGAGAAAAAGGACTACAAAAGCAAAAAATTTCTGCAGAACATCA
TCAAGTACCTCCAGCAAATGGAGCAGGAGAAACAGCCAAAGAAGCCAATC
AACGAAATACCAGAGTATCTAGACTTCCTGGATGATGTCCAGGATCCTAC
AGAGGGTCTAACTCGCATTTCAGAGAAATGCAATAGTCTGCCCCAAGAAT
GGTGTGTCCTCCAGCTCTGCAAGAGCTTTAATCCCGCCACCACCTACTCC
GTTTTCAATGAGATCATTGCCAGCGATGGAGCAATATATCTCACTCTGCT
CCGACACTGTAGAAGTTCCCAACTGGGACCGATTTGCCTGAAAATTTCCA
ACGAAAATACGGCAAATCTCTTTCGAGAGTATAGCACTCTGGTGGAAAGA
TTTAGGCGAGTGGTAACCGTGGATCCACTCAACATGAAAGGTAAAGAGGC
TAAGCAGAAGTATTGGGAGGAGCTGAATGGTTTTGACACTTTTCAGCAAA
AACTACTTGCCGACTTTCGGGACATAATATCTCCATATTCCTTTCTGTTC
TTTGGCAAAAGATATGACTGCACTGTTGTTCAAAAACAATCAAAGCCACC
TATACTCGTGTTGACGATTTCT
MXO03758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10583-PA | 1905 | Sse-RA | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG10583-PA | 1905 | Sse-RA | 831..865 | 838..872 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sse-RA | 2177 | CG10583-RA | 94..958 | 9..872 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5661267..5661740 | 749..276 | 2370 | 100 | Minus |
| 3L | 28110227 | 3L | 5661802..5661998 | 277..81 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 5661086..5661209 | 872..750 | 570 | 99.2 | Minus |
| 3L | 28110227 | 3L | 5662082..5662154 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader3 | 5484 | invader3 INVADER3 5484bp | 2503..2540 | 750..713 | 109 | 76.3 | Minus |
MXO03758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:49:36 Download gff for
MXO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10583-PA | 1..865 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:07 Download gff for
MXO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 88..958 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:35 Download gff for
MXO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sse-RA | 88..958 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:35 Download gff for
MXO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5661086..5661209 | 750..872 | 99 | <- | Minus |
| 3L | 5661267..5661738 | 278..749 | 100 | <- | Minus |
| 3L | 5661802..5661997 | 82..277 | 100 | <- | Minus |
| 3L | 5662082..5662159 | 1..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:07 Download gff for
MXO03758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5654186..5654309 | 750..872 | 99 | <- | Minus |
| arm_3L | 5654367..5654838 | 278..749 | 100 | <- | Minus |
| arm_3L | 5654902..5655097 | 82..277 | 100 | <- | Minus |
| arm_3L | 5655182..5655259 | 1..81 | 95 | | Minus |
