MXO03761.5prime Sequence
836 bp (732 high quality bases) assembled on 2007-07-18
> MXO03761.5prime
CAGTCGACATGCCATACCATCGAGGCGGAGATGCCTCTTCCCAGGCCGAC
AAGCTGAGCGGCATCGTGGAGGAGAGCGATCTGTACGAAGGGTTCGCCCC
GCATGTCGAGACGTCCGAGATCAAAACCCTCGACTTCTACAATTTACCAA
AGCAAACTGGCAAGGAACCGGCACTGCGCTCCTACACGGAAATCCAGCAG
CTGCTGCAGCAGGGCAAGAAGCGCGACGTGAAGAACATACTCAGGGAGAA
CTCGTGGCCCATTAACTCCCCGATCCGAGCCCAGCTATGGCCGATGTTGT
GTGGCCAGCACCAGACCAAACAGCAAATGCTAGATGGCTTCTACTGGGAG
ATGGTTCACCAGGTCTTTGGCACCACGGAGCTGTCGGAGAAGCCGATCAT
GCTGCCCGCCTTTGTGGATGCCACCCACTGTTTGCCCTACCACTTGACCA
GCACGGGACGAGCCGTGGCCGATCGCATCGTGAATGTCCTGGGCTACGAC
TGCCCCGATATTACCTACAGTCCAGTATTGTATCCCATTACATCGATACT
TTTGCATTTCATGTCGGAGGAGGAGGCGTACATATGTCTGGCCGGTCTGG
TCGGTAGCAAGGAGAAGGTATTCATCAATCAAACCAAACTACAGCACGAA
GTCACTTGGAAGACGGTGATGCAGATAGCCAAAAAGCACACAAAAAGTGC
TACTTCGTATTTCCAACGTATTTGCCCGGGCCTGAAGCTAGAACGCATCT
TCATGGACTGGTGCTGGTGGATTCTAGCCGGTCTACCCTTCCAGCATCTG
GTGCGGATCATGGACTGCTACTTCCACGAGGGCATC
MXO03761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9339-PB | 1764 | CG9339-RB | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG9339-PE | 1707 | CG9339-RE | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG9339-PD | 1707 | CG9339-RD | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG9339-PH | 1764 | CG9339-RH | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG9339-PG | 1707 | CG9339-RG | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG9339-PA | 1764 | CG9339-RA | 1..828 | 9..836 | 4140 | 100 | Plus |
| CG9339-PC | 1779 | CG9339-RC | 166..843 | 159..836 | 3390 | 100 | Plus |
| CG9339-PF | 1722 | CG9339-RF | 166..843 | 159..836 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43739-RA | 4863 | CG43739-RA | 743..1570 | 9..836 | 4140 | 100 | Plus |
| sky-RL | 4921 | CG9339-RL | 687..1514 | 9..836 | 4140 | 100 | Plus |
| sky-RK | 5158 | CG9339-RK | 951..1778 | 9..836 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20881987..20882194 | 567..360 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882465 | 364..159 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 20903015..20903166 | 160..9 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 20877334..20877477 | 836..693 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 692..567 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:44 has no hits.
MXO03761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:00 Download gff for
MXO03761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-PE | 1..828 | 9..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:09 Download gff for
MXO03761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RJ | 760..1592 | 2..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:37 Download gff for
MXO03761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RK | 946..1778 | 2..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:37 Download gff for
MXO03761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20903016..20903171 | 2..159 | 97 | | Minus |
| 2L | 20877334..20877477 | 693..836 | 100 | <- | Minus |
| 2L | 20877553..20877677 | 568..692 | 100 | <- | Minus |
| 2L | 20881987..20882191 | 363..567 | 100 | <- | Minus |
| 2L | 20882262..20882464 | 160..362 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:09 Download gff for
MXO03761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20877334..20877477 | 693..836 | 100 | <- | Minus |
| arm_2L | 20877553..20877677 | 568..692 | 100 | <- | Minus |
| arm_2L | 20881987..20882191 | 363..567 | 100 | <- | Minus |
| arm_2L | 20882262..20882464 | 160..362 | 100 | <- | Minus |
| arm_2L | 20903016..20903171 | 2..159 | 97 | | Minus |
