MXO03766.5prime Sequence
796 bp (752 high quality bases) assembled on 2007-07-18
> MXO03766.5prime
CAGTCGACATGCCTTGCGACAACGCCCAAACCTCTTCGGATATCGAGCAT
GTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTCGGTTCGGG
CAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCATCTGCCACT
GCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATTGCTCCGGC
AGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTCACCGCCTC
CGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCATGCACACCA
AGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCGGCATTGAA
AGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCAGCCCTGTG
CGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGACGATGTCC
AGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCGTTGTCACC
GTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGCAAGGCATA
TCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCTACTGATTC
AGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCCCAGTGGCC
GCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGATCGACGAG
CGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATACTGTGCCC
ACGAGGGCAACTGTGCATCAATGGATAATGGTGGCGGCGGTGCCGA
MXO03766.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4080-PA | 1854 | CG4080-RA | 1..788 | 9..796 | 3865 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4080-RB | 3453 | CG4080-RB | 642..1429 | 9..796 | 3895 | 99.6 | Plus |
| CG4080-RA | 2771 | CG4080-RA | 642..1429 | 9..796 | 3895 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9390567..9390801 | 320..86 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 9388909..9389122 | 796..583 | 1040 | 99.1 | Minus |
| 3L | 28110227 | 3L | 9390281..9390427 | 465..319 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 9390002..9390124 | 586..464 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 9398507..9398586 | 88..9 | 385 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:04 has no hits.
MXO03766.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:19 Download gff for
MXO03766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-PA | 1..787 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:20 Download gff for
MXO03766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 642..1428 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:54 Download gff for
MXO03766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4080-RA | 642..1428 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:54 Download gff for
MXO03766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9388910..9389118 | 587..795 | 99 | <- | Minus |
| 3L | 9390002..9390122 | 466..586 | 100 | <- | Minus |
| 3L | 9390281..9390425 | 321..465 | 100 | <- | Minus |
| 3L | 9390567..9390798 | 89..320 | 100 | <- | Minus |
| 3L | 9398507..9398586 | 9..88 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:20 Download gff for
MXO03766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9382010..9382218 | 587..795 | 99 | <- | Minus |
| arm_3L | 9383102..9383222 | 466..586 | 100 | <- | Minus |
| arm_3L | 9383381..9383525 | 321..465 | 100 | <- | Minus |
| arm_3L | 9383667..9383898 | 89..320 | 100 | <- | Minus |
| arm_3L | 9391607..9391686 | 9..88 | 98 | | Minus |
