MXO03767.5prime Sequence
790 bp (789 high quality bases) assembled on 2007-07-18
> MXO03767.5prime
CAGTCGACATGAGCAGCATCACGTTTTTGTGCAGCAAGTCGGGCCACAAC
ACCAACAACAACAGCATTAATAGTAGCAATAACGATGTTCCAAAAGGGGC
AAAAGCGAACTCAGCATTTGCAGCCGCATCCGCCGGTTTACTAACCATCG
CAAACCACCAGCAGCAACAGCTACTTCAGCAACCACATCAACAGCAGCAG
CAACAACAACAACAGCATCATCAGCAGTCAAAGGTTAAGGCTATAGCAGC
CAAAACCAATGGTCACATCGATGACCGTTCACTCTCGGATGTCACAGAGC
AACTCTATGTGGATCCGTATGCCGACCTAAGCAATGGCTTGCCCGGGGAT
CTCAACTGCTGTCCGGCCTCGCCCACCACAGTGCCTGCTAAAGCATCGTT
GGATTCGCCTCTTAAACGTTCCGGTAGGAGACAGCGAACCACATCCATTG
GCAACCAGACCACCACAGCGAATCCGTCCGAATGCATCATACGCGCAAAT
AACCGCACGATCTACACGGCCGGACGACCGCCGTGGTACAATTGTGCTGG
GCAACAGGTGGAGCCCTTCGTCATAGGAATCTGCGGCGGTAGTGCCTCTG
GCAAGACCACAGTGGCTGAGAAAATCATCGAAAGCCTAGACGTTCCATGG
GTAACACTGTTGTCCATGGACTGTTTCTACAAGATCCTTAATGAGAAACA
GCATGAGCAGGCCCTGATCAACGAATATAACTTCGATCACCCGGATGCCT
TCGACATCGAGCTGCTGCTGGACGTGCTCACCAAGCTGAA
MXO03767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4798-PB | 1881 | l(2)k01209-RB | 1..782 | 9..790 | 3910 | 100 | Plus |
| CG4798-PC | 1881 | l(2)k01209-RC | 1..782 | 9..790 | 3910 | 100 | Plus |
| CG4798-PD | 1881 | l(2)k01209-RD | 1..782 | 9..790 | 3910 | 100 | Plus |
| CG4798-PA | 1686 | l(2)k01209-RA | 66..587 | 269..790 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k01209-RD | 2284 | CG4798-RD | 311..1092 | 9..790 | 3910 | 100 | Plus |
| l(2)k01209-RC | 2380 | CG4798-RC | 407..1188 | 9..790 | 3910 | 100 | Plus |
| l(2)k01209-RB | 3254 | CG4798-RB | 1281..2062 | 9..790 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17423656..17423964 | 269..577 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 17421687..17421946 | 9..268 | 1300 | 100 | Plus |
| 2R | 25286936 | 2R | 17424026..17424134 | 575..683 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 17424196..17424304 | 682..790 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2491 | 12..226 | 337 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6948 | 31..232 | 279 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2583 | 5..243 | 244 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..7055 | 5..219 | 162 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1588 | 50..125 | 124 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1150 | 31..85 | 122 | 69.1 | Plus |
| BS | 5142 | BS BS 5142bp | 1977..2071 | 12..108 | 120 | 59.8 | Plus |
MXO03767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:23 Download gff for
MXO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4798-PD | 1..780 | 9..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:40 Download gff for
MXO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RB | 1281..2062 | 9..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:36 Download gff for
MXO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k01209-RB | 1281..2062 | 9..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:36 Download gff for
MXO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17424198..17424304 | 684..790 | 100 | | Plus |
| 2R | 17423656..17423963 | 269..576 | 100 | -> | Plus |
| 2R | 17424028..17424134 | 577..683 | 100 | -> | Plus |
| 2R | 17421687..17421946 | 9..268 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:40 Download gff for
MXO03767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13309192..13309451 | 9..268 | 100 | -> | Plus |
| arm_2R | 13311161..13311468 | 269..576 | 100 | -> | Plus |
| arm_2R | 13311533..13311639 | 577..683 | 100 | -> | Plus |
| arm_2R | 13311703..13311809 | 684..790 | 100 | | Plus |
