MXO03768.5prime Sequence
870 bp (720 high quality bases) assembled on 2007-07-18
> MXO03768.5prime
CAGTCGACATGTCGGTGGTTATAGAAACCACGATGGGTGACCTGACCGTC
GACCTGTTCATCAGCGAGCGCCCAATTGCCTGCCTAAACTTCCTCAAGCT
GTGCCGGCTGAAGTACTATAACTTCAATCTATTTCACACGGTGCAGCAGG
GATTCATCGCCCAAACAGGCGATCCGAGTGGAGCTGGAGACGGCGGATCC
TCCATCTGGGGCGTGGTGGAGGGTCCGCAAAAGCGCTTCTTCGAGGCGGA
GTTCCTGCCCAAGATTAACCACTCCAGTGCCGGAATGCTATCGCTGGTCA
GTGCAGGCAAGAATCTGGTGGGATCCCAGTTCTTCCTCACGCTGGGTGAG
AACCTAACATCGCTGGACGGCAACCACTGCGTTATCTGTGAAGTGGTGGA
AGGTCACGAGGTGCTGCGCAAGCTAAACGACGCCATTGTTGACGACAGCT
TCCGTCCTTACCAGGATATACGCATCACACACACTGTTGTGCTTGAGGAT
CCGTTTCCTAATCCGCGCGGCCTTCAGGCTCCAAGTCGCTCACCTTCGCC
CAGTGCGGAGCGTCTGAAGAACGGGCGCATCGCTGCCGACGAGGATATCG
ATGACACTGATGGCATGACCGCGGAGGAGATGCAGGAGATGCTGGCCGAA
CGAGAGGCCAAGGCTCGAGCCACAATCCTTGAGATTGTCGGCGATTTACC
CGATGCAGACATGGCTCCGCCAGAAAATGTCTTGTTTGTGTGCAAACTCA
ATCCTGTTACAACCGACGATGATCTGGAGATAATCTTTAGTAGCTTCGGC
GTGCTTAAGGATGTGAGGTGATTCGCGACCGCAAAACGGGAGATTCTCTG
CAATATGCTTTTGTGGAGTT
MXO03768.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-PA | 1962 | CG5808-RA | 1..800 | 9..808 | 3975 | 99.8 | Plus |
| CG5808-PA | 1962 | CG5808-RA | 800..863 | 807..870 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-RA | 2043 | CG5808-RA | 56..918 | 9..870 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24816090..24816952 | 870..9 | 4250 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:30 has no hits.
MXO03768.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:29 Download gff for
MXO03768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-PA | 1..863 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:26 Download gff for
MXO03768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 46..918 | 1..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:13 Download gff for
MXO03768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 46..918 | 1..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:13 Download gff for
MXO03768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24816090..24816956 | 1..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:26 Download gff for
MXO03768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20641812..20642678 | 1..870 | 99 | | Minus |
