MXO03769.5prime Sequence
817 bp (724 high quality bases) assembled on 2007-07-18
> MXO03769.5prime
CAGTCGACATGACCACAACGAACTCACGCAATTCCAGCACCACCTCGGTG
ACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCCACCACATC
GAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCACTACCAGCA
GCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCTTTGGTTCC
CGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCCACCGGCAA
TGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGACCTGACTA
AGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGCGGAGCAGC
ACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACTGGACTAAC
CTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGAGAAGGTCA
AGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGCCGCTCAAG
AAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTGGGCGGCAA
GAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCATGATTTGG
CGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATCAACTACCT
GAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCCACGATTGC
AGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCATACTCACGG
ATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCACCATCGGCG
GCTATCCATGTGCTGGG
MXO03769.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31012-PC | 2649 | CG31012-RC | 1034..1844 | 7..817 | 4005 | 99.7 | Plus |
| CG31012-PD | 1908 | CG31012-RD | 293..1103 | 7..817 | 4005 | 99.7 | Plus |
| CG31012-PB | 1614 | CG31012-RB | 1..809 | 9..817 | 3995 | 99.7 | Plus |
| CG31012-PA | 1638 | CG31012-RA | 1..809 | 9..817 | 3995 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..2675 | 7..817 | 4025 | 99.8 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..915 | 7..817 | 4025 | 99.8 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..971 | 7..817 | 4025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824362..30824888 | 7..533 | 2620 | 99.8 | Plus |
| 3R | 32079331 | 3R | 30824954..30825240 | 531..817 | 1420 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 115..163 | 114 | 74.5 | Plus |
MXO03769.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:33 Download gff for
MXO03769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PD | 288..1103 | 1..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:21 Download gff for
MXO03769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..971 | 1..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:24 Download gff for
MXO03769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..971 | 1..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:24 Download gff for
MXO03769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824357..30824886 | 1..531 | 99 | -> | Plus |
| 3R | 30824955..30825240 | 532..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:21 Download gff for
MXO03769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650079..26650608 | 1..531 | 99 | -> | Plus |
| arm_3R | 26650677..26650962 | 532..817 | 99 | | Plus |
