MXO03772.5prime Sequence
792 bp (742 high quality bases) assembled on 2007-07-18
> MXO03772.5prime
CAGTCGACATGCCAGCCAAACCAGTGAATCCCGATCTCCAGAAGGAACGC
AGCACGGCCACCTTCAATCCCCGGGAGTTCTCCGTTCTGTGGGCCGGCGG
CGAGGAGCGATTCAAGGAGAAGAAGGCCCTGGAGAAATTGTTTTTGGAGG
ATCCAGCCCTTCAGGACGACTTGCCCATTTCCTATTTGTCACACAAGGAG
CTCTATGAGCACAGCTTGCGCAAAGCCTGCATCATAGGAGAGAAGATCCG
CAAGCTACGTGCTGATGGCGAGGATGGAGTGGATACTTACAATGCTCTGC
TTGGTGGATCCTTGGGATCGGCTATTCTAAAGGAGGGCAATCCGCTTGCG
CTGCACTACGTGATGTTCGTGCCCACCATCATGGGCCAGGGAACGATGGA
TCAGCAGGTGGAATGGCTGAGCAAGGCCTGGGACTGTGAAATCATTGGCA
CCTATGCCCAAACGGAACTGGGACACGGAACCTTCCTGCGCGGTCTGGAG
ACCAGGGCTGACTACGATGCCAGCACCCAGGAGTTTGTTATAAACACTCC
ATCACTCAGTGCATACAAGTGGTGGCCCGGTGGATTGGGACACACTGCTA
ACCATGCGGTTGTGGTGGCACAACTCTACACCAAGGGCGAGTTCCGTGGT
CTGGCTCCTTTTATTGTCCAATTGAGGGATTCCGATACTCACCGTCCCAT
GCCCGGCATCGACATTGGAGATATTGGTACCAAGCTGGGCATGAAGGGTG
TCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTT
MXO03772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5009-PA | 2010 | CG5009-RA | 1..784 | 9..792 | 3920 | 100 | Plus |
| CG9707-PA | 2034 | Acox57D-p-RA | 460..512 | 447..499 | 165 | 92.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5009-RA | 2506 | CG5009-RA | 327..1110 | 9..792 | 3920 | 100 | Plus |
| CG4586-RA | 2240 | CG4586-RA | 554..691 | 447..584 | 255 | 79 | Plus |
| Acox57D-p-RB | 2235 | CG9707-RB | 516..568 | 447..499 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17762336..17762635 | 286..585 | 1470 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17762693..17762899 | 586..792 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 17762128..17762288 | 132..292 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 17761266..17761389 | 9..132 | 620 | 100 | Plus |
| X | 23542271 | X | 6970471..6970608 | 447..584 | 255 | 79 | Plus |
| 2R | 25286936 | 2R | 21387296..21387348 | 447..499 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:18 has no hits.
MXO03772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:47 Download gff for
MXO03772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5009-PA | 1..784 | 9..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:28 Download gff for
MXO03772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5009-RA | 320..1110 | 1..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:37 Download gff for
MXO03772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5009-RA | 320..1110 | 1..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:37 Download gff for
MXO03772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17761259..17761389 | 1..132 | 96 | -> | Plus |
| 2R | 17762129..17762288 | 133..292 | 100 | -> | Plus |
| 2R | 17762343..17762635 | 293..585 | 100 | -> | Plus |
| 2R | 17762693..17762899 | 586..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:28 Download gff for
MXO03772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13648764..13648894 | 1..132 | 96 | -> | Plus |
| arm_2R | 13649634..13649793 | 133..292 | 100 | -> | Plus |
| arm_2R | 13649848..13650140 | 293..585 | 100 | -> | Plus |
| arm_2R | 13650198..13650404 | 586..792 | 100 | | Plus |
