MXO03773.5prime Sequence
835 bp (770 high quality bases) assembled on 2007-07-18
> MXO03773.5prime
CAGTCGACATGGACACGAACGCTGGGGAGTCGCTGGGAGCATCGCCGCCC
TCGAGCAATGAGGCAGCGGCGGGATCACAGTCCCAGAGCGATGCCTCCGA
GGAGGAGGAGTATCTGGACAACAGTATCGAACTGAGGGGCTATCTCAGCA
AGTGGACGAACTACATCTATGGATGGCAGCCACGCTACATAGTCCTGAAG
GATGGTACACTCTCCTACTATAAATCCGAATCGGAGTCGGATTTCGGGTG
CCGCGGAGCCATCAGCCTGACCAAGGCCACCATTAAGGCCCATGAGTCCG
ACGAGCTCCGATTCGATGTTGTGGTGAACAACTTAAATAACTGGTGCCTG
CGGGCAGAGACCAGCGAGGACCGCATGCACTGGGTGGATGTGCTGCAGCT
GTACAAGGCGGACTCCGGCAGCACGGACACCACTTCCTTGCGCCGCCATG
GCAGTACCATGAGCCTGCAATCGAACACTATCTCGCTGACCAGCGGAGGA
AGCCTAAAGAAGACGCAGCGCAACCTGCGCGAAAAAGTCGGCGAGCTGGA
GACCTTTAAGGATATACTATTTGGACAGATCGAGACTCTGCAGCGATACT
TTGATGCCTGCTCGGAGGTGAACAAAAACAATGCGCAACCACTGGACCTG
GGCGACGGTCTGAAGTCCATCGATTTCAAGGGCGAATCCATCACGTTTCG
GGCCACAACGTCTGGCGTGCTAACCACCCTGCAGCATTGCCTAGAAATCA
TCGCCGAGAGCGATGAGTCATGGAAACGGAAACTGGAGCGTGAAATAGAT
AAGCGTCGACGTTCTGAGGACCAAAGCAAAAAGCT
MXO03773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7207-PA | 1806 | CG7207-RA | 1..827 | 9..835 | 4110 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cert-RC | 2394 | CG7207-RC | 31..857 | 9..835 | 4120 | 99.9 | Plus |
| cert-RA | 2557 | CG7207-RA | 194..1020 | 9..835 | 4120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8287827..8288222 | 681..286 | 1980 | 100 | Minus |
| 3L | 28110227 | 3L | 8289169..8289448 | 288..9 | 1400 | 100 | Minus |
| 3L | 28110227 | 3L | 8287609..8287759 | 829..679 | 740 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:07 has no hits.
MXO03773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:52 Download gff for
MXO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7207-PA | 1..827 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:22 Download gff for
MXO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cert-RA | 238..1069 | 2..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:55 Download gff for
MXO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cert-RA | 189..1020 | 2..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:55 Download gff for
MXO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8287603..8287757 | 681..835 | 97 | <- | Minus |
| 3L | 8287828..8288220 | 288..680 | 100 | <- | Minus |
| 3L | 8289170..8289451 | 2..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:22 Download gff for
MXO03773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8282270..8282551 | 2..287 | 98 | | Minus |
| arm_3L | 8280703..8280857 | 681..835 | 97 | <- | Minus |
| arm_3L | 8280928..8281320 | 288..680 | 100 | <- | Minus |
