MXO03774.5prime Sequence
847 bp (761 high quality bases) assembled on 2007-07-18
> MXO03774.5prime
CAGTCGACATGGCGCGCAATGTGCTCCAGAGCAGCCTGCTGGGCGCCGGC
TTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTCGGCATCAA
CGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCATTATGAATG
TCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCCGCGAGGCC
ATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGATCGCTGCTC
CTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCATTTGCGCTG
TTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGTCGGCGGTG
GACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCCGTGGCCTT
TTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGTCGCCCAGG
TCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGCACATCCTG
GTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGCAGTGCGGC
AATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGACCATTGTCC
TGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCAAGGATTTC
GTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCCTGGCAGGT
CTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCTGAGCGACT
TCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCAACCGGGAA
CTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGGGCTGAAACA
MXO03774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-PA | 1671 | CG3149-RA | 1..836 | 9..844 | 4130 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3149-RA | 2020 | CG3149-RA | 141..976 | 9..844 | 4150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5694058..5694622 | 844..280 | 2795 | 99.6 | Minus |
| X | 23542271 | X | 5694691..5694908 | 284..67 | 1090 | 100 | Minus |
| X | 23542271 | X | 5695006..5695065 | 68..9 | 285 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:28 has no hits.
MXO03774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:50:57 Download gff for
MXO03774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-PA | 1..838 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:45 Download gff for
MXO03774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 134..978 | 1..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:42 Download gff for
MXO03774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3149-RA | 134..978 | 1..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:42 Download gff for
MXO03774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5694056..5694618 | 284..846 | 99 | <- | Minus |
| X | 5694692..5694906 | 69..283 | 100 | <- | Minus |
| X | 5695006..5695070 | 1..68 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:45 Download gff for
MXO03774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5588089..5588651 | 284..846 | 99 | <- | Minus |
| arm_X | 5588725..5588939 | 69..283 | 100 | <- | Minus |
| arm_X | 5589039..5589103 | 1..68 | 92 | | Minus |
